Part of scaffold_78 (Scaffold)

For more information consult the page for scaffold_78 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SHOC2 ENSTTRG00000006982 (Bottlenosed dolphin)

Gene Details

soc-2 suppressor of clear homolog (C. elegans)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006602, Bottlenosed dolphin)

Protein Percentage 99.83%
cDNA percentage 99.31%
Ka/Ks Ratio 0.03755 (Ka = 0.0008, Ks = 0.0207)

SHOC2 ENSBTAG00000007709 (Cow)

Gene Details

Leucine-rich repeat protein SHOC-2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000010138, Cow)

Protein Percentage 99.83%
cDNA percentage 97.77%
Ka/Ks Ratio 0.00895 (Ka = 0.0008, Ks = 0.0874)

SHOC2  (Minke Whale)

Gene Details

soc-2 suppressor of clear homolog (C. elegans)

External Links

Gene match (Identifier: BACU004642, Minke Whale)

Protein Percentage 99.83%
cDNA percentage 99.6%
Ka/Ks Ratio 0.0532 (Ka = 0.0007, Ks = 0.0139)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1809 bp    Location:1464363..1507707   Strand:+
>bmy_02811
ATGAGTAGTAGTTTAGGAAAAGAAAAAGACTCTAAAGAGAAAGATCCCAAAGCACCATCAGCCAAGGAAAGAGAAAAGGAGGCAAAAGCCTCTGGAGGTTTTGGGAAAGAGAGCAAAGAAAAAGAACCTAAGACCAAAGGGAAAGATGCCAAAGATGGAAAGAAGGACTCCAGTGCTGCCCAACCAGGGGTGGCGTTTTCAGTTGATAATACGATCAAACGGCCAAATCCAGCACCTGGGACTAGAAAGAAATCTAGCAATGCAGAGGTGATTAAAGAGCTCAACAAATGCCGGGAAGAGAACTCAATGCGTTTGGACTTATCCAAGAGGTCTATACACATATTGCCATCATCAATCAAAGAGTTGACTCAATTAACAGAACTTTATTTATATAGCAACAAATTACAGTCCCTCCCAGCAGAAGTGGGCTGTCTAGTAAATCTCATGACACTTGCTCTAAGTGAAAATTCACTTACCAGTTTGCCTGATTCTCTTGATAACTTGAAGAAGCTGCGGATGCTTGATTTACGGCATAATAAACTGAGAGAAATTCCTTCAGTGGTGTATAGGCTGGATTCTCTTACCACTCTTTACCTTCGCTTTAATCGAATAACTACTGTGGAAAAAGACATCAAAAACCTGTCAAAACTCAGCATGCTTAGCATTCGAGAGAACAAAATCAAACAACTACCTGCTGAAATTGGTGAATTATGTAACCTCATTACGCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGAATTGCTAGACCTCCCAGATACTATAGCCTGGGACAGTGACAGGCTCATCGGATTAAAAAAAATTCCATTTTTTTGTGTGTTCACAGGAAACCTGTCCAGTTTAAGTCGTCTTGGTCTGAGATACAACAGACTGTCAGCAATACCCAGATCATTGGCAAAATGCAGTGCACTTGAAGAATTAAATTTAGAGAACAATAACATTTCTACTTTACCAGAGAGTCTTTTATCAAGTCTTGTGAAACTGAATAGTTTGACCTTAGCTAGAAACTGCTTCCAGTTATATCCAGTAGGTGGTCCATCTCAGTTTTCCACCATCTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTCTCCAGAGCAAAAGTATTAAGTAAGCTGAATATGAAGGACAATCAGTTGACATCACTTCCCTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCTACAAATCAGCTCACAAAGATCCCTGAGGATGTGTCTGGTCTTGTTTCTCTTGAGGTTCTGATATTATCAAACAATCTTCTAAAGAAGCTTCCCCATGGTCTTGGAAACCTTAGGAAGTTAAGAGAGTTGGATCTRGAGGAGAACAAATTAGAATCCTTGCCAAATGAAATTGCTTATCTTAAGGATTTACAGAAATTAGTCTTGACAAACAACCAATTAACCACTCTTCCGAGAGGCATTGGTCACCTTACCAATCTTACACATCTAGGCCTTGGAGAGAACCTACTTACTCATCTTCCTGAGGAAATTGGTACACTGGAGAATCTAGAAGAGCTGTATTTGAATGACAACCCCAACCTGCATAGCCTTCCCTTTGAGCTGGCTCTTTGCAGCAAGCTTTCAATCATGAGTATTGAGAACTGTCCACTCAGCCATCTTCCACCTCAGATTGTTGCTGGGGGTCCTTCTTTCATCATTCAGTTCCTAAAGATGCAGGGTCCATATCGTGCCATGGTCTGA

Related Sequences

bmy_02811T0 Protein

Length: 603 aa      View alignments
>bmy_02811T0
MSSSLGKEKDSKEKDPKAPSAKEREKEAKASGGFGKESKEKEPKTKGKDAKDGKKDSSAAQPGVAFSVDNTIKRPNPAPGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTIAWDSDRLIGLKKIPFFCVFTGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV*