Part of scaffold_79 (Scaffold)

For more information consult the page for scaffold_79 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POLR1E ENSTTRG00000008294 (Bottlenosed dolphin)

Gene Details

polymerase (RNA) I polypeptide E, 53kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007858, Bottlenosed dolphin)

Protein Percentage 91.04%
cDNA percentage 92.35%
Ka/Ks Ratio 0.53959 (Ka = 0.07, Ks = 0.1298)

POLR1E ENSBTAG00000012243 (Cow)

Gene Details

DNA-directed RNA polymerase I subunit RPA49

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016250, Cow)

Protein Percentage 91.4%
cDNA percentage 92.47%
Ka/Ks Ratio 0.19415 (Ka = 0.0408, Ks = 0.2101)

POLR1E  (Minke Whale)

Gene Details

polymerase (RNA) I polypeptide E, 53kDa

External Links

Gene match (Identifier: BACU017545, Minke Whale)

Protein Percentage 98.57%
cDNA percentage 99.28%
Ka/Ks Ratio 0.86223 (Ka = 0.007, Ks = 0.0081)

Genome Location

Sequence Coding sequence

Length: 840 bp    Location:966546..945691   Strand:-
>bmy_02846
ATGGCGGCGGAGGTGTTGCCGAGTGCCAGGTGGCTGTACTGTGGAGAGCCCGACGAGAGCCAGAGAGCTCTACTGGTCCAGTTCTCCAACGGGAAGCTACAGGATCCAGGCAACATGCGCTTTACCTTGTACAAGAGCAATGACTCCACAAACCCCAGAAAGAGGAGTCAGCGGATCCTGGCAGCTGAAACAGACAGACTTTCCTATGTGGGAAACAATTTTGGGACTGGAGCCCTGAAATGCAACACTCTCTGCAGGCACTTTGTGGGAATTTTGAACAAGACCTCTGGCCAAATGGAAGTATATGATGCTGAATTGTTCAATATGCAGCCGCTGTTTTCCGATGAATCAGTTCAGACCCTGGTCAGTGACGCCATCCACGATGACTTGCAGGATGACTCCCTCTACCTCCCTCCCTGCCACGCTGATGCAGCCAAGCCTGAAGACGTGTATAAATTTGAAGACCGTGCCCTGGGACCTGGAATTCCCCACATCATTAACACCAAACTGCTGAAGCAGTTTACCTGCTTGATCTACAACAATGGCAGTTTGCGGAACTTAATTTCAGACTCTATGAAGGCAAAGATCACCGCCTATGTGATCATACTGGCTTTGCACATAAACGGCTTCCAGATTGACCTGACAGTGTTACAGAGGGACTTGAAGCTCAGTGAGAAAAGGATGATGGAGATAGCGAAAGCCATGAGGCTGAAGATCTCTAAAAGAAGGGTTTCTCTGGCAGTGGGCAGGGAGGAGGATCACAAACTGGGCACCCTGTCCATCCCACTGCCCCCAGCCCAGGCCTTGGACCGTCAGTCAAAGCGGAGGAAAATCACCTAG

Related Sequences

bmy_02846T0 Protein

Length: 280 aa      View alignments
>bmy_02846T0
MAAEVLPSARWLYCGEPDESQRALLVQFSNGKLQDPGNMRFTLYKSNDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDAELFNMQPLFSDESVQTLVSDAIHDDLQDDSLYLPPCHADAAKPEDVYKFEDRALGPGIPHIINTKLLKQFTCLIYNNGSLRNLISDSMKAKITAYVIILALHINGFQIDLTVLQRDLKLSEKRMMEIAKAMRLKISKRRVSLAVGREEDHKLGTLSIPLPPAQALDRQSKRRKIT*