Part of scaffold_80 (Scaffold)

For more information consult the page for scaffold_80 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LHX1 ENSTTRG00000008900 (Bottlenosed dolphin)

Gene Details

LIM homeobox 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008440, Bottlenosed dolphin)

Protein Percentage 96.6%
cDNA percentage 96.74%
Ka/Ks Ratio 0.19273 (Ka = 0.0222, Ks = 0.1149)

LHX1 ENSBTAG00000033562 (Cow)

Gene Details

LIM/homeobox protein Lhx1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000044870, Cow)

Protein Percentage 96.6%
cDNA percentage 94.75%
Ka/Ks Ratio 0.07121 (Ka = 0.0214, Ks = 0.3009)

LHX1  (Minke Whale)

Gene Details

LIM homeobox 1

External Links

Gene match (Identifier: BACU013984, Minke Whale)

Protein Percentage 96.6%
cDNA percentage 97.16%
Ka/Ks Ratio 0.28328 (Ka = 0.0224, Ks = 0.079)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 804 bp    Location:263496..270223   Strand:+
>bmy_02867
ATGGTGCACTGTGCCGGCTGCAAAAGGCCCATCCTGGACCGCTTCCTCTTGAACGTGCTGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGAGAAGTGCTTCTCCCGGGAAGGCAAGCTCTACTGCAAAAACGACTTCTTCCGGTGTTTCGGTACCAAATGCGCAGGCTGCGCGCAGGGCATCTCCCCTAGCGACCTGGTGCGGAGAGCCCGGAGCAAAGTGTTTCACCTGAACTGCTTCACCTGCATGATGTGTAACAAGCAGCTCTCCACCGGCGAGGAGCTCTACATCATCGATGAGAACAAGTTCGTCTGCAAAGAGGATTACCTAAGCAACAGCAGCGTCGCCAAAGAGAACAGCCTCCACTCGGGTGAGGCCCTAATTCTCGGCTCCTTAGAGGCGGGTGGGTCCCGGGGGAGGAAGGCCCGCCAAGGTTGCTGCTCACCTGTCCCTTCCCTCTCCCCAGCCACCACGGGCAGTGACCCCAGTTTGTCTCCGGACTCCCAAGACCCGTCGCAGGACGACGCCAAGGACTCGGAGAGCGCCAATGTGTCGGACAAGGAAGGCGGCAGCAATGAGAACGACGACCAGAACCTGGGGGCCAAGCGGAGAGGGCCGCGCACCACCATCAAAGCCAAGCAGCTGGAGACGCTGAAGGCCGCCTTTGCCGCTACACCCAAGCCCACGCGCCACATCCGCGAGCAGCTGGCTCAGGAGACTGGCCTCAACATGCGTGTCATCCAGGTCAGGGCCCGAGCGTGCCACTCAGTTCCCTAG

Related Sequences

bmy_02867T0 Protein

Length: 268 aa      View alignments
>bmy_02867T0
MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSGEALILGSLEAGGSRGRKARQGCCSPVPSLSPATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVRARACHSVP*