Part of scaffold_80 (Scaffold)

For more information consult the page for scaffold_80 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HNF1B ENSTTRG00000015910 (Bottlenosed dolphin)

Gene Details

HNF1 homeobox B

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015076, Bottlenosed dolphin)

Protein Percentage 92.45%
cDNA percentage 92.08%
Ka/Ks Ratio 0.24548 (Ka = 0.0564, Ks = 0.2297)

BT.41992 ENSBTAG00000004710 (Cow)

Gene Details

hepatocyte nuclear factor 1-beta

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006184, Cow)

Protein Percentage 93.95%
cDNA percentage 91.58%
Ka/Ks Ratio 0.12578 (Ka = 0.0426, Ks = 0.3385)

HNF1B  (Minke Whale)

Gene Details

HNF1 homeobox B

External Links

Gene match (Identifier: BACU013976, Minke Whale)

Protein Percentage 94.21%
cDNA percentage 93.6%
Ka/Ks Ratio 0.25276 (Ka = 0.0465, Ks = 0.1838)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1143 bp    Location:961635..949753   Strand:-
>bmy_02879
ATGGTGTCCAAGCTCACGTCGCTCCAGCAAGAACTCCTGAGCGCCCTGCTGAGCTCCGGGGTCACCAAGGAGGTGCTGGTCCAGGCCTTGGAGGAGTTGCTGCCATCCCCGAGTTTCGGGGTGAAGCTGGAGACGCTGCCCCTGTCCCCTGGGAGTGGGGCCGAGCCGGACACCAAGCCGGTCTTCCATACTCTCACGAACGGCCACGCCAAGGGCCGTCTGTCCGGGGACGAGGGCTCCGAGGACGGGGACGACTATGACACCCCTCCCATCCTCAAGGAGCTGCAAGCCCTCAACACCGAGGAGGCGGCGGAGCAGCGGGCGGAGGTGGACCGGATGCTCAGCGAGGACCCTTGGAGGGCGGCCAAAATGATCAAGGGCTACATGCAGCAACACAACATCCCCCAGAGGGAAGTGGTCGACGTCACCGGCCTGAACCAGTCACACCTGTCCCAGCATCTCAACAAGGGCACCCCTATGAAGACCCAGAAGCGCGCCGCCCTGTACACCTGGTACGTCCGAAAGCAACGGGAGATCCTCCGACAATTCAACCAGACAGTCCAGAGTTCTGGAAATTTGACAGACAAAAGCAGTCAGGATCAGCTGCTGTTTCTCTTTCCAGAGTTCAGTCAACAGAGCCAGGGGCCTGGGCAGTCCGATGATGCCTGCTCTGAGCCCACCAACAAGAAGATGCGTCGCAACCGGTTCAAATGGGGGCCCGCRTCCCAGCAAATCTTGTACCAGGCCTACGACCGGCAAAAGAACCCCAGCAAGGAAGAGAGGGAGGCCTTAGTGGAGGAGTGCAACAGGGCGGAATGTTTGCAGCGAGGTGTCTCCCCCTCCAAGGCCCATGGCCTGGGCTCCAACCTGGTCACTGAGGTCCGCGTCTACAACTGGTTCGCGAACCGCAGGAAGGAGGAGGCATTCCGGCAGAAGCTGGCCATGGACGCCTACAGCTCCAGCCAGACGCACGGCCTGAACCCGCTGCTCTCCCACGGCTCCCCCCCGCACCAGCCCAGCACTTCCCCTCCCAACAAGCTGCCAGGTAAGCCGGGCCCCAACGCCTCGGCGACCCGACCCTCCGGCTTCTCCCCACGGCGCTCAGGGTATCTCAGAGGAGGCAGTGCTTTTGGATGGTCCTAG

Related Sequences

bmy_02879T0 Protein

Length: 381 aa      View alignments
>bmy_02879T0
MVSKLTSLQQELLSALLSSGVTKEVLVQALEELLPSPSFGVKLETLPLSPGSGAEPDTKPVFHTLTNGHAKGRLSGDEGSEDGDDYDTPPILKELQALNTEEAAEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREILRQFNQTVQSSGNLTDKSSQDQLLFLFPEFSQQSQGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSSSQTHGLNPLLSHGSPPHQPSTSPPNKLPGKPGPNASATRPSGFSPRRSGYLRGGSAFGWS*