Part of scaffold_80 (Scaffold)

For more information consult the page for scaffold_80 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LIG3 ENSTTRG00000015470 (Bottlenosed dolphin)

Gene Details

ligase III, DNA, ATP-dependent

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014659, Bottlenosed dolphin)

Protein Percentage 94.44%
cDNA percentage 95.87%
Ka/Ks Ratio 0.49657 (Ka = 0.0346, Ks = 0.0698)

BT.25483 ENSBTAG00000018689 (Cow)

Gene Details

DNA ligase 3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024875, Cow)

Protein Percentage 89.98%
cDNA percentage 91.68%
Ka/Ks Ratio 0.30675 (Ka = 0.0589, Ks = 0.1921)

LIG3  (Minke Whale)

Gene Details

ligase III, DNA, ATP-dependent

External Links

Gene match (Identifier: BACU013951, Minke Whale)

Protein Percentage 80.6%
cDNA percentage 84.21%
Ka/Ks Ratio 0.51399 (Ka = 0.1529, Ks = 0.2975)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2106 bp    Location:1886735..1865741   Strand:-
>bmy_02913
CGCCGCTGGGGCCTGGACCTCTGCGCCTGCGCGCTGCGGCCAGCGCAAGGACCCGGATTTAAAGAGACAGGCGTTACAACCTTGGTGGCTGCGCGCGGCCTGTGGGTGCCTGGCCCTAGGCCTGAGGTGGAGCCGGAGCCGGGAAGGCAGGGAGTTCAGAGCCTCCCCCACCCATCGACTTATTTTAATTTTCCCAGCCATCCCGTGAGCTGTATGACTTTGGCTTTTAAGATCCTCTTACCACCAACTCTCCGTGCGCTCAGCCAAAAAGAACTGTGCCTATTCCGAGAACAACATCACTGGCCTGACATAAGACAGTTCAGCCGGTGGTCAGAAACAGTTCTTCGTGGACACCGCCTCCTCCAGAGAAGAAAGCCTGTTGTGTCATTCCAGGAAAGCAATCTAAGACCACGTGCCACCCGCCTTGTTTTCTTGCCAGGGTCGCATGTGGGACTCTGCAGTGGCCCCTGTGAGATGGCAGAGCAACGGTTCTGTGTGGACTATGCCAAGCGTGGCACAGCCGGCTGCAAAAAATGCAAGGAAAAGATTGTAAAGGGCGTGTGCCGAATCGGCAAGGTGGTGCCCAATCCCTTTTCAGAGTCAGGGGGCGATATGAAAGAGTGGTACCACATTAAATGCATGTTTGAGAAACTGGAGCGGGCCCGGGCCACCACAAAAAAAATTGAGGACCTCACAGAGCTGGAAGGCTGGGAAGAGCTGGAAGATAATGAGAAAGAACAGATAAGCCAGCACATTGCAGATCTGTCTTCCAAGGCAGGAAACACACCAAAGAAGAAAGCTGTTGTCCAGGCTAAGTTGACAGCCACTGGCCAGGTGACATCTCCAGTGAAAGGTGCCTCATTTGTCACCAATACCAATCCCCGGAAATTTTCTGGCTTTTCAGATGGTTTCCACGGTGACGTGTACCTAACAGTGAAGCTGCTGCTGCCGGGTGTTATTAAGAGTGTTTACAACTTGAATGATAAGCAGATTGTGAAGCTTTTCAGCCGCATTTTTAACTGCAACTCAGATGATATGGCACGAGACCTAGAGCAGGGTGACGTGTCAGAGACAATCAGAGTCTTCTTTGAGCAGAGCAAGTCTTTCCCCCCAGCTGCCAAGAGCCTTCTTACCATCCAGGAGGTGGATGAATTCCTCCTGCGGCTCTCCAAGCTCACCAAGGAGGACGAGCAGCAGCAGGCCCTGCAGGACATCGCCTCCAGGTGTACAGCCAATGACCTTAAGTGCATCATCAGGTTGATCAAACATGATCTGAAGATGAACTCAGGTGCAAAACATGTGTTAGATGCCCTAGACCCCAATGCCTATGAAGCCTTCAAAGCCTCGCGCAACCTGCACGATGTGGTGGAGCGGGTCCTCCGCAACGAGCAGGAGGTGAAGAAGGAGCCAGGCCGGAAACGAGCTCTGAGTGTCCAGGCCTCACTGATGACCCCGGTGCAGCCCATGCTGGCCGAGGCCTGCAAGTCCATCGAGTACGCGATGAAGAAGTGTCCGAATGGCATGTTCTCTGAGATCAAGTATGATGGGGAGCGAGTCCAGGTACATAAGAACGGGGACCACTTCAGCTACTTCAGCCGCAGTCTCAAGCCAGTCCTGCCGCACAAGGTGGCCCACTTTAAGGACTACATCCCCCAGGCTTTCCCTGGGGGCCACAGCATGATCTTGGACTCTGAGGTGCTCCTGATCGACAACAAGAAAGGCAAACCACTGCCCTTTGGGACTCTGGGAGTGCACAAGAAAGCTGCCTTCCAGGATGCTAATGTCTGCCTGTTTGTTTTTGATTGTATCTACTTCAATGATGTCAGCTTGATGGATAGGCCTCTGTTTGAGCGGCGGAAGTTTCTTCACGATAACATGGTTGAAATTCCCAACCGGATCATGTTCTCAGAAATGAAGCAAGTCGCAAAAGCTTCCGACTTGGCTGACATGATCAACCGGGTGATCCAAGAGGGGTTGGAAGGGCTGGTGCTGAAGGACGTGAAGAGTTCTGGATCCCAGAGGATGGGTTTGTGTATGTCTCCCATAGTGCCTGGAGCAGAGCGGGTTGGGCACTGTGACAGATGCGTATGTCRTGTGAAGAGGTAA

Related Sequences

bmy_02913T0 Protein

Length: 702 aa      View alignments
>bmy_02913T0
RRWGLDLCACALRPAQGPGFKETGVTTLVAARGLWVPGPRPEVEPEPGRQGVQSLPHPSTYFNFPSHPVSCMTLAFKILLPPTLRALSQKELCLFREQHHWPDIRQFSRWSETVLRGHRLLQRRKPVVSFQESNLRPRATRLVFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKAGNTPKKKAVVQAKLTATGQVTSPVKGASFVTNTNPRKFSGFSDGFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNSDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLHDVVERVLRNEQEVKKEPGRKRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKKGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLFERRKFLHDNMVEIPNRIMFSEMKQVAKASDLADMINRVIQEGLEGLVLKDVKSSGSQRMGLCMSPIVPGAERVGHCDRCVCXVKR*