Part of scaffold_87 (Scaffold)

For more information consult the page for scaffold_87 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRUB1 ENSTTRG00000005767 (Bottlenosed dolphin)

Gene Details

TruB pseudouridine (psi) synthase homolog 1 (E. coli)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005445, Bottlenosed dolphin)

Protein Percentage 68.32%
cDNA percentage 75.7%
Ka/Ks Ratio 0.87425 (Ka = 0.293, Ks = 0.3351)

BT.57021 ENSBTAG00000012955 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017209, Cow)

Protein Percentage 93.14%
cDNA percentage 93.62%
Ka/Ks Ratio 0.23629 (Ka = 0.0352, Ks = 0.1489)

TRUB1  (Minke Whale)

Gene Details

TruB pseudouridine (psi) synthase family member 1

External Links

Gene match (Identifier: BACU004675, Minke Whale)

Protein Percentage 99.58%
cDNA percentage 99.58%
Ka/Ks Ratio 0.14835 (Ka = 0.0018, Ks = 0.0123)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 834 bp    Location:2114292..2143589   Strand:+
>bmy_03059
ATGGCAGCTGCTGAGGCGGCGGTCGTATCGTCGTCATCCTTGAAACCAGACACAGCCCCAGTCCCCGAAAGTGCAGGAATGGCTGCAGCCACGGCCGCCACATCCTCAGCGATGGCTGCAGCCGCGGCGGTTGCGGCCAGGAGCGGATCCGAAGCCAGGGTCTCCAAGCCCGCGTTGGCTACTAAGCTGCTGTCCCTGAGCGGCGTGTTCGCCGTGCACAAGCCCAAAGGGCCCACTTCAGCCGAGCTGCTGAATCGGCTGAAGGAGAAGCTGCTGGCAGAAGCTGGAATGCCTTCTCCAGAATGGACCAAGAGGAAAAAGCAGACTTTGAAAATTGGGCATGGAGGGACTCTAGACAGTGCAGCCCGAGGAGTCCTGGTGGTTGGAATTGGAAGGGGAACAAAACTGTTGACCAGTATGTTGTCAGGGTCCAAGAGGTATATTGCCACTGGCGAACTGGGGAAAGCTACTGACACGCTAGATTCTACAGGGAAAGTAACAGAAGAAAAACCTTACGATGTTGAATGTGGAGGAGGTTTTTATATCAGAAGCTTGGTCAGTGACATTGGCAAAGAACTGTCTTCCTGTGCCAATGTGCTGGAGCTGACCCGAACCAAACAGGGACCCTTTACACTGGAGGAGCATGCCCTTCCCGAAGACAGATGGACAATTGATGACATTGCACAGTCTCTCGAGCAGTGCTCATCCCTTCTCCCAGCAGAGATGGCACTTAAAAAGTCAAAACCTGAGGAGTCTAGTGAGCAAGTTTTGAGCTGTGAGTACATAACTCTAAGTGAGATAAAGGGAGAAGATGATGTAATTAAGACATTTTAA

Related Sequences

bmy_03059T0 Protein

Length: 278 aa      View alignments
>bmy_03059T0
MAAAEAAVVSSSSLKPDTAPVPESAGMAAATAATSSAMAAAAAVAARSGSEARVSKPALATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVVGIGRGTKLLTSMLSGSKRYIATGELGKATDTLDSTGKVTEEKPYDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDRWTIDDIAQSLEQCSSLLPAEMALKKSKPEESSEQVLSCEYITLSEIKGEDDVIKTF*