Part of scaffold_86 (Scaffold)

For more information consult the page for scaffold_86 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SPG20 ENSTTRG00000003853 (Bottlenosed dolphin)

Gene Details

Spastic paraplegia 20

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003624, Bottlenosed dolphin)

Protein Percentage 98.78%
cDNA percentage 98.61%
Ka/Ks Ratio 0.12883 (Ka = 0.0054, Ks = 0.0422)

SPG20 ENSBTAG00000008040 (Cow)

Gene Details

Spartin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000010577, Cow)

Protein Percentage 94.29%
cDNA percentage 92.91%
Ka/Ks Ratio 0.14896 (Ka = 0.0322, Ks = 0.2159)

SPG20  (Minke Whale)

Gene Details

spastic paraplegia 20 (Troyer syndrome)

External Links

Gene match (Identifier: BACU015762, Minke Whale)

Protein Percentage 99.83%
cDNA percentage 98.73%
Ka/Ks Ratio 0.01733 (Ka = 0.0008, Ks = 0.0464)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1737 bp    Location:592486..608948   Strand:+
>bmy_03067
ATGGAACAAGAGCCACAAGACGGAGAACCTGCTGAAATTAAGATCATCAAGGAAGCATACAAGAAGGCCTTTTTATTTGTTAATAAAGGACTGAATACAGATGAATTAGGTCAGAAAGAAGAAGCAAAGAACTATTATAAGCAAGGAATAGGGCACTTACTCAGAGGAATCAGCATTTCATCAGCAGATCCCGAACACATAGGTCCTGGGTGGGAATCTGCTAGGCAGATGCAACAGAAAATGAAAGAAACACTACAGAATGTACGTACGAGGCTGGAAATTCTAGAGAAGGGTCTTGCCACTTCTCTACGGAATGATCTTCAGGAGGTGCCCAAGTTATATCCAGAATTTCCGCCTAAAGATATGTCCGAAAAGTCACTGGAGCCTCAGTCCTTTAATTCACTTCCTCAGCACAATGAAGTAAATGGAAACACTTCAACTACAAGCACAGAATCAGTTTCTACACCTAGTACTTTTTCCTTACCATCTCAGAGTCATCCATCAGAAGCACCTCCTGCATATACCCCTCAGGCTGCTGAGGGTCACTACACTGTATCCTATGGAACAGAATCTGGGGAGTTCTCATCAGTTGGGGAAAACTTTTATAGGAATCATTCTCAGCCACCTCCTCTTGAGACCTTAGGGCTAGATGCAGATGAGTTGATTTTGATACCAAATGGAGTACAGATTTTTTTTGTAAATCCTGCAGGGGAGGTTAGTGCACCTTCATATCCTGGGTACCTTCGAATCGTGAGGTTCTTGGATAATTCTCTTGATACAGTTCTAAACCGTCCTCCTGGGTTTCTTCAGGTTTGTGACTGGTTGTATCCTCTAGTTCCTGATAGATCTCCAGTTCTTAAATGTACTGTAGGAGCCTACATGTTTCCTGATACAATGTTACAAGCATCAGGATGCTTTGTGGGGGTCGTCTTGTCTTCTGAATTACCAGAAGATGATAGAGAACTCTTTGAGGATCTATTAAGACAAATGTCTGACCTTCGGCTCCAGGCCAACTGGGACCGGGCAGAAGGAGAAAATGAATTCCAAATCCCTGGAAGATCAAGATGCCCCTCTAACCAATTGAAGGAAGCCAGTGGCACTGATGTGAGACAGTTGGACCCAGGCAGTAAGGATGTGCGTCATAAGGGAAAAAGGGGGAAAAAGACCAAAGGTACTTCAAGTGAAGAAGTTAATCTGAGTCACATTGTACCTTATGAGCCAGTTTCAGAAGAAAAAGCAAAGGAATTACCTGAATGGAGTGAGAAAGTGGCTCAAAACATTTTGTCAGGTGCTTCCTGGGTGAGTTGGGGTTTGGTCAAAGGTGCTGAGTTTACTGGCAAAGCCATCCAGAAAGGCGCTTCTAAACTCCGAGAACGGATTCAACCAGAAGAAAAACCAGTGGAAGTTAGTCCAGCTGTGACCAAGGGACTTTATATAGCAAAGCAGGCTACCGGAGGAGCAGCGAAAGTCAGTCAGTTCCTGGTTGACGGAGTTTGTACTGTAGCAAATTGTGTTGGAAAGGAATTAGCTCCACATGTCAAGAAGCATGGAAGCAAACTTGTTCCAGAATCTCTTAAAAAAGACAAAAATGGGAAGTCTCCCCTGGATGGTGCTATGGTTGTAGCAGCAAGCAGTGTTCAAGGATTTTCAACTGTCTGGCAAGGATTGGAATGTGCAGCTAAATGCATTGTTAATAATGTTTCAGTAGAAACTGTACAAACTGTCAGATACAAGTAA

Related Sequences

bmy_03067T0 Protein

Length: 579 aa      View alignments
>bmy_03067T0
MEQEPQDGEPAEIKIIKEAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSADPEHIGPGWESARQMQQKMKETLQNVRTRLEILEKGLATSLRNDLQEVPKLYPEFPPKDMSEKSLEPQSFNSLPQHNEVNGNTSTTSTESVSTPSTFSLPSQSHPSEAPPAYTPQAAEGHYTVSYGTESGEFSSVGENFYRNHSQPPPLETLGLDADELILIPNGVQIFFVNPAGEVSAPSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYPLVPDRSPVLKCTVGAYMFPDTMLQASGCFVGVVLSSELPEDDRELFEDLLRQMSDLRLQANWDRAEGENEFQIPGRSRCPSNQLKEASGTDVRQLDPGSKDVRHKGKRGKKTKGTSSEEVNLSHIVPYEPVSEEKAKELPEWSEKVAQNILSGASWVSWGLVKGAEFTGKAIQKGASKLRERIQPEEKPVEVSPAVTKGLYIAKQATGGAAKVSQFLVDGVCTVANCVGKELAPHVKKHGSKLVPESLKKDKNGKSPLDGAMVVAASSVQGFSTVWQGLECAAKCIVNNVSVETVQTVRYK*