Sequence detailsbmy_03087 (Coding sequence)

Part of scaffold_90 (SequenceType object (1))

For more information consult the page for scaffold_90 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

EFHC1ENSTTRG00000015213 (Bottlenosed dolphin)

Gene Details

EF-hand domain (C-terminal) containing 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014425, Bottlenosed dolphin)

Protein Percentage 92.34%
cDNA percentage 93.49%
Ka/Ks Ratio 0.61484 (Ka = 0.0153, Ks = 0.0249)

EFHC1ENSBTAG00000017810 (Cow)

Gene Details

EF-hand domain-containing protein 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000023678, Cow)

Protein Percentage 92.66%
cDNA percentage 92.14%
Ka/Ks Ratio 0.17478 (Ka = 0.0388, Ks = 0.2221)

EFHC1 (Minke Whale)

Gene Details

EF-hand domain (C-terminal) containing 1

External Links

Gene match (Identifier: BACU015858, Minke Whale)

Protein Percentage 98.75%
cDNA percentage 99.22%
Ka/Ks Ratio 0.47599 (Ka = 0.006, Ks = 0.0126)

Additional orthologs identified in other species via the OPTIC pipeline.

EFHC1 (Human)   Efhc1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2172 bp    Location:506229..565493   Strand:+
Raw sequence 
>bmy_03087
CCGCGGCCCGAGAGGGGAGCGGCGCGACCAGCTCGCTGCGGCCACACTCCCGCGAGAGCGCCTAGTCCCGCGGGCGGCGCACGCGCAGACCCGGCACGCCTGCGCCTCAGGCCCGACCCCTCTTCCGTGAGCGCTCGGGATGTTTGGCGTTACCAAGGAGCTGCTGGGGCCCTTGAGAACGCCGCTGGTCCCTGCGGCAACCCGGGAGGACCAAACCCGACCGAGGTGGCCGCGGCCAGAGCGGCTGCGATGATGTCCAACCCAGTGCATGGCCTGCCCTTTCTCCCGGGCACGTCCTTTAAGGACTCCACGAAAACAGCATTTCATAGAAGCCAGACGCTTGGCTATAGGAATGGCTATGCAGTTGTTCGACGTCCAACAGTTGGGATCGGCGGGGACCGGCTCCAGGTCAGCCAGCTGTCTCAGGCTGAGCTGGACGAGCTGGCCAGCAAGGCACCAGTCCTCGCGTACGGCCAGCCCAAGCAGGCCCCGCGTGCAGAATTCATTCCTGCCTATGTGGCTTTCGACAAAAAGGTGCTGAAATTTGATGCCTATTTCCAAGAAGATGTTCCTCTGTCAACTGAGGAACGTTACAGGATCCGCCGAGTTAACATTTACTACTATTTGGAAGATGACAGCATGTCTGTCATAGAGCCCGTTGTGGAAAACTCCGGGATCCCTCAAGGCAAGTTAATCAAACGACAGCGCCTAGCCAAGAATGACCGGGGAGACCATTACCATTGGAAAGACCTAAACCGAGGAATAAACATCACAATTTATGGCAGAACTTTCCGCATTGTTGACTGTGACAAGTTCACACAGATATTTTTGGAAAGTCAAGGAATTGAACTAAATCCACCAGAGAAGATGGCTCTCGATCCTTACACTGAACTCCGGAAACAGCCTCTTCGTAAGTATGTGACTCCAACAGACTTTGATCAACTCAAGCAGTTTCTCACCTTTGACAAACAAGTTCTTCGATTCTATGCGATCTGGGATGATACAGACAGCATGTTTGGTGAATGTCGGACCTACATCATTCATTACTATCTTATGGATGATACAGTGGAAATTCGAGAGGTCCACGAACGGAATGATGGGCGAGATCCCTTCCCACTCCTCATGAGCCGCCAGCGCATGCCCAAGGTTTTGGTGGAAAATGCAAAGAACTTCCCTCGGTGTGTGCTGGAAATCTCAGACAAGGAGGTGTTGGAATGGTATACTGCCAAAGACTTCATTGTTGGGAAGCCACTCACTATACTTGGGAGAACTTTCTTCATTTATGATTGTGATCCATTTACTCGGCAGTATTACAAAGAAAAATTTGGAATCTCCGATTTACCACGCATTGATGTGAGCAAGAAGGAGCCACCTCCTGTGAAACAGGAATTACCTCCCTATAACGGTTATGGACTAGTTGAAGACTCTGCTCAGAATTGCTTTGCGCTCATTCCAAAAGCTCCAAAAAAAGATGTTATTAAAATGCTGATGAATGAGAACAAGGTGCTTCGTTATTTGGCTGCACTGGAATCCCCCATCCCAGAAGACAAAGACCGCCGATTTGTCTTCTCTTATTTTCTAGCCACTGACATGATCAGTATCTTTGAGCCTCCTGTTCGCAATTCTGGTATCATTGGGGGCAAGTATCTTGGCAGAACTAAAGTTGTCAAACCAGGCTCCTCAGTGGAAAACCCCATCTATTATGGCCCCAGTGACTTCTTCATTGGTGCTGTGATTGAGGTGTTTGGCCACCGGTTCGTCATCCTTGACACAGACGACTGTGTTCTGAAATACATGGAGAGCAATGCTGCCCAGTATTCACCAGAAGCACTCCTGTCAATTCAGAACCATGTTCGAAAGCAAGAAGCTCCTGCACCAGAATTGGACAACCAGCAAACGGAAGAGGACCCAGGCGTGCAGGAACTGGAGGCCCTGATAGACACGATCCAGAAGCAAGGGAAAGATCGCCCGTGCAGGGACAACATCCGCAAGATGTTTCAAATTTATGACAAGGAAGCTTCAGGACATGTGGACAGGGAGACGTTCTTTAAAATCTGTGACTCTTTTCACCTCCCAGTTGACGATTCCTTGGTTAAGGAGCTCATCAGGATGTGCTCTCACGGAGAAGACAAGATTGACTACTATAACTTTGTCCGTGCTTTCTCCAACTGA

Related Sequences

bmy_03087T0 SequenceType object (3)

Length: 724 aa      View alignments
>bmy_03087T0
PRPERGAARPARCGHTPARAPSPAGGARADPARLRLRPDPSSVSARDVWRYQGAAGALENAAGPCGNPGGPNPTEVAAARAAAMMSNPVHGLPFLPGTSFKDSTKTAFHRSQTLGYRNGYAVVRRPTVGIGGDRLQVSQLSQAELDELASKAPVLAYGQPKQAPRAEFIPAYVAFDKKVLKFDAYFQEDVPLSTEERYRIRRVNIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQRLAKNDRGDHYHWKDLNRGINITIYGRTFRIVDCDKFTQIFLESQGIELNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECRTYIIHYYLMDDTVEIREVHERNDGRDPFPLLMSRQRMPKVLVENAKNFPRCVLEISDKEVLEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLVEDSAQNCFALIPKAPKKDVIKMLMNENKVLRYLAALESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPGSSVENPIYYGPSDFFIGAVIEVFGHRFVILDTDDCVLKYMESNAAQYSPEALLSIQNHVRKQEAPAPELDNQQTEEDPGVQELEALIDTIQKQGKDRPCRDNIRKMFQIYDKEASGHVDRETFFKICDSFHLPVDDSLVKELIRMCSHGEDKIDYYNFVRAFSN*