Sequence detailsbmy_03160 (Coding sequence)

Part of scaffold_90 (SequenceType object (1))

For more information consult the page for scaffold_90 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

DDX39BENSTTRG00000014074 (Bottlenosed dolphin)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000013346, Bottlenosed dolphin)

Protein Percentage 92.74%
cDNA percentage 92.19%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0192)

DDX39BENSBTAG00000014490 (Cow)

Gene Details

Spliceosome RNA helicase DDX39B

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000029090, Cow)

Protein Percentage 99.77%
cDNA percentage 97.27%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.0924)

Additional orthologs identified in other species via the OPTIC pipeline.

Ddx39b (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1962 bp    Location:2127693..2139965   Strand:+
Raw sequence 
>bmy_03160
ATGGCAGAGAACGATGTGGACAATGAGCTCTTGGATTATGAAGATGATGAGGTGGAGACAGCAGCTGGGGGAGATGGGGCTGAGGCCCCTGCCAAGAAGGATGTCAAGGGCTCCTACGTTTCCATTCACAGCTCTGGCTTTCGTGACTTCCTGCTCAAGCCAGAGTTGCTCCGGGCCATTGTTGACTGTGGCTTTGAGCATCCATCAGAAGAGAGGAGCTGGTTGGACCCTTGGGCCAGGCCAACTCTGGTCTCTGGAAACCTTTATGGCTGGTCTAAGGATGGCTGGCTTTTGGTCCAGCATGAATGCATCCCTCAGGCCATCCTGGGAATGGATGTCCTATGCCAGGCCAAGTCAGGCATGGGAAAGACGGCGGTGTTTGTGCTGGCTACACTGCAACAACTGGAGCCAGTTACTGGGCAGGTGTCTGTACTGGTGATGTGTCACACTCGGGAGTTGGCTTTTCAGATCAGCAAGGAATATGAACGCTTCTCTAAATACATGCCCAAYGTCAAGGTCGCAGTGTTTTTTGGTGGTCTGTCTATCAAGAAAGATGAAGAGGTGCTGAAGAAGAACTGCCCGCATATCGTCGTGGGGACCCCTGGCCGCATCCTAGCCCTGGCTCGAAATAAGAGCCTCAATCTCAAACACATTAAACACTTTATCTTGGATGAATGCGATAAGATGCTTGAACAGCTCGACATGCGTCGGGATGTCCAGGAAATTTTTCGCATGACCCCCCATGAGAAGCAGGTCATGATGTTCAGTGCTACCTTGAGCAAAGAGATTCGCCCAGTCTGCCGCAAGTTCATGCAAGACGTAAATACCCTTCTACCTTCTCTCCCTCCACTCCCCGCCCGCTGCCTCCTCCCCCTCCGCGCCCTCTTCCTCCAGACTCCCTTGTCCTTCAAGCGCCAAGAAGGGGGCACATGCCCATTTGGGAGTGATGACTCCTTGAAGAGACACACAGAGGCAGAGACAGTTAGTGTTAGGGTCTGCGCGGGCGCCAGGGAAACTCCGGAAGACTTGGTCGGGTTAACGAGAGCAAGAGAGGGACAGACAGATGGCAGGGCATTGTCCAAAAGAAGAGCAAACAGCACAGATGAATCCGCTCCCTCCCCACCTCCAGGGGTGGGGGCCTTTGGCACCTCAATCCCCGAGTCCATACTCCTTCCCACCCGTACCTCCTCCTCGCACCCATCCGGAACCTTGGTTGATGTGAGCCGGCAGCAGAGAAGCACCGTGGCGCGGCGGGGGAATGCGGACGGCACCCGGCGGTGGATGGCGGCAGCGGAGGCCGCGGGGAACCTGACCAGGAAGCCGAGGACCAAACCAGCCTCTTTTTCCGTTCCCGGTTTTTTTCCTGAACCCAAGGCGTGCCGTGTTCCCTATTTCCCTCCATTTGTGTTGCCAATGGAGATCTTCGTGGATGATGAGACGAAGCTGACGCTGCATGGGTTGCAGCAGTACTACGTGAAACTGAAGGACAACGAGAAGAACCGGAAGCTCTTTGACCTTCTGGATGTCCTTGAATTCAACCAGGTGGTGATATTTGTGAAGTCTGTGCAGCGTTGCATTGCCCTGGCCCAGCTCTTGGTGGAGCAGAACTTCCCAGCTATTGCCATCCACCGTGGGATGCCTCAGGAGGAGAGGCTTTCTCGGTATCAGCAGTTTAAAGATTTTCAACGACGAATTCTTGTGGCTACCAACCTGTTTGGCCGAGGCATGGACATCGAGCGGGTGAACATTGCCTTTAACTACGACATGCCTGAGGATTCTGACACCTACCTGCATCGGGTGGCCAGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCCATCACGTTTGTGTCAGATGAGAATGATGCCAAGATTCTCAATGATGTGCAGGATCGCTTTGAAGTCAATATTAGTGAGCTGCCTGATGAGATAGACATCTCCTCCTACATTGAACAGACGCGGTAG

Related Sequences

bmy_03160T0 SequenceType object (3)

Length: 654 aa      View alignments
>bmy_03160T0
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEERSWLDPWARPTLVSGNLYGWSKDGWLLVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPLRALFLQTPLSFKRQEGGTCPFGSDDSLKRHTEAETVSVRVCAGARETPEDLVGLTRAREGQTDGRALSKRRANSTDESAPSPPPGVGAFGTSIPESILLPTRTSSSHPSGTLVDVSRQQRSTVARRGNADGTRRWMAAAEAAGNLTRKPRTKPASFSVPGFFPEPKACRVPYFPPFVLPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR*