Sequence details bmy_03259 (Coding sequence)

Part of scaffold_94 (Scaffold)

For more information consult the page for scaffold_94 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

UPK2 ENSTTRG00000002960 (Bottlenosed dolphin)

Gene Details

uroplakin 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002765, Bottlenosed dolphin)

Protein Percentage 99.08%
cDNA percentage 98.47%
Ka/Ks Ratio 0.0953 (Ka = 0.0044, Ks = 0.046)

UPK2 ENSBTAG00000012750 (Cow)

Gene Details

Uroplakin-2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016947, Cow)

Protein Percentage 94.21%
cDNA percentage 94.49%
Ka/Ks Ratio 0.18532 (Ka = 0.0279, Ks = 0.1507)

UPK2  (Minke Whale)

Gene Details

uroplakin 2

External Links

Gene match (Identifier: BACU017328, Minke Whale)

Protein Percentage 99.17%
cDNA percentage 98.35%
Ka/Ks Ratio 0.07557 (Ka = 0.004, Ks = 0.0524)

Additional orthologs identified in other species via the OPTIC pipeline.

UPK2 (Human)   Upk2 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 363 bp    Location:365894..364574   Strand:-
Raw sequence 
>bmy_03259
GACTTCAACATCTCAAGCCTCTCTGGTCTGCTGTCCCCAGCGCTGACGGAAAGCCTGCTAGTTGCCCTGCCCCCCTGTCACCTCACAGGGGGCAATGCCACACTGATGGTCCGGAGAGCCAATGACAGCAAAGTGGTGAAATCTAGCTTCGTGGTGCCTCCGTGCCGCGGACGCAGGGAGCTGGTGAGCGTGGTGGACAGTGGGTCTGGCTTCACGGTCACCCGGCTCAGAAGGAAGGCAGAATCTATTGGGCTGGGAATGGCCCGGACGGGGGGCATGGTGGTCATCACGGTGCTGCTCTCTGTAGCCATGTTCCTGCTGGTTCTGGGCTTCATCATCGCCCTGGCACTGGGCGCCCAAAAG

Related Sequences

bmy_03259T0 Protein

Length: 121 aa      View alignments
>bmy_03259T0
DFNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKVVKSSFVVPPCRGRRELVSVVDSGSGFTVTRLRRKAESIGLGMARTGGMVVITVLLSVAMFLLVLGFIIALALGAQK