Part of scaffold_94 (Scaffold)

For more information consult the page for scaffold_94 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CD3E ENSTTRG00000004241 (Bottlenosed dolphin)

Gene Details

CD3e molecule, epsilon (CD3-TCR complex)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003995, Bottlenosed dolphin)

Protein Percentage 82.89%
cDNA percentage 91.44%
Ka/Ks Ratio 1.92367 (Ka = 0.1061, Ks = 0.0552)

CD3E ENSBTAG00000015710 (Cow)

Gene Details

T-cell surface glycoprotein CD3 epsilon chain

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020859, Cow)

Protein Percentage 72.73%
cDNA percentage 82.89%
Ka/Ks Ratio 0.78062 (Ka = 0.185, Ks = 0.237)

CD3E  (Minke Whale)

Gene Details

CD3e molecule, epsilon (CD3-TCR complex)

External Links

Gene match (Identifier: BACU017316, Minke Whale)

Protein Percentage 96.85%
cDNA percentage 98.95%
Ka/Ks Ratio 99.0 (Ka = 0.0141, Ks = 0.0001)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 597 bp    Location:866362..856213   Strand:-
>bmy_03275
ATGCAGTCGGGGAATCTCTGGAGAGTTCTGGGACTCTGCCTCTTATCAGTTGGCGCTTGGGCAGAAGAAGATTTTGAAGAAACTGATGAAGTTACACAAACACAAACACTGAAATCATATAAAGTCTMCATCTCTGGAAACAATGTAGAGCTGACATGCCCTGAGGATATTGCATCTGAGGAAGTAACTTGGAAAAAAGATGGTATAGAAATGCCCCATGTTTATGACAAACCACTGTTACTGCAGGATTTTTCAGAAATAGAGAACAGCGGTTATTATACCTGCTCAAAGGACGAGAATCATAAGCTCTACCTGAAAGCAAGAGTGTGTGAGAACTGCGTGGAGGCAGATCTGATGGTGGTGGCCACAATCATCGTAGTGGACGTCTGCGTCACTTTGGGCTTGCTGCTGCTGGTGTATTACTGGAGCAAGAGCAGAAAGGCCAAGGCCATGCCTGTGACGAGAGGAGCGGGTGCTGGCAGCAGGCCCAGGGGACAAAACAGGCAGAGGCCACCACCTGTACCCAACCCAGACTATGAGCCCATCCGGAAAGGCCAGCGGGACCTGTATGCTGGCCTAAATCAGAGAGGCATCTGA

Related Sequences

bmy_03275T0 Protein

Length: 199 aa      View alignments
>bmy_03275T0
MQSGNLWRVLGLCLLSVGAWAEEDFEETDEVTQTQTLKSYKVXISGNNVELTCPEDIASEEVTWKKDGIEMPHVYDKPLLLQDFSEIENSGYYTCSKDENHKLYLKARVCENCVEADLMVVATIIVVDVCVTLGLLLLVYYWSKSRKAKAMPVTRGAGAGSRPRGQNRQRPPPVPNPDYEPIRKGQRDLYAGLNQRGI*