Sequence detailsbmy_03319 (Coding sequence)

Part of scaffold_96 (SequenceType object (1))

For more information consult the page for scaffold_96 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TOPAZ1ENSTTRG00000006307 (Bottlenosed dolphin)

Gene Details

testis and ovary specific PAZ domain containing 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000005966, Bottlenosed dolphin)

Protein Percentage 93.86%
cDNA percentage 97.04%
Ka/Ks Ratio 0.71444 (Ka = 0.0265, Ks = 0.037)

C3ORF77ENSBTAG00000044167 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000053356, Cow)

Protein Percentage 82.06%
cDNA percentage 89.67%
Ka/Ks Ratio 0.58449 (Ka = 0.0972, Ks = 0.1663)

TOPAZ1 (Minke Whale)

Gene Details

testis and ovary specific PAZ domain containing 1

External Links

Gene match (Identifier: BACU015679, Minke Whale)

Protein Percentage 14.5%
cDNA percentage 32.24%
Ka/Ks Ratio 0.16683 (Ka = 1.8544, Ks = 11.1153)

Additional orthologs identified in other species via the OPTIC pipeline.

TOPAZ1 (Human)  

Genome Location

Sequence SequenceType object (2)

Length: 2871 bp    Location:1998494..2008928   Strand:+
Raw sequence 
>bmy_03319
ATGCTGCGGTCGCGGACCTCGGGGCCCGCGAGGGCCCCGGGGCGTGAAGGCGACGCGCGAGGCCCGAGGAAGAGAGGCAGGCGGCCTGGACCAGGCGAGGCGGGAGGCTGTGGCCCTGAGGCCGGGGGGCGCAAGGAGAGCAGGCAAAAGAGGAGGATGGTGGCCCGGGCGTCTGGGAGAGAAGAGGTGGAAAGTGACAAGTCGGGTGAGGCGTTTGGGGCCGGGAAGGCCTCAGCGAGGCGGCGAGTGGAGGGGCCGGGGGGCCAGGTGGGCTCTTCAGACCCTTCGGACCGGCCGGGCTTAGAAGCAGCGAAGGAGGCGGAGCTCCCCTTGCAATCGGGAAGACACACCAAGGAAAAAAGAAAAGTTACTGAAGCCTCAAGGGATGATCCACAGCCAGGGATTGACCTGGTAAGAAAGGAATCATTAACCAGTTCGGAATCTTTCCAAACAGTGGAATGCAGTGAATTTCAAAGTATGGCTTTCTTGCAGTCTTTGGGTAAGGAAGGTTTGGTAAAAAGTATTAAAAGAAGAATTCGAATTAAAAAATTTAAAAGCTTAGAACGCCCATCTCTCAAAATAACTGAAAATAAGGCTACACAAAATAGTAAGGTTGAATTCCAAGATGAACTGTACAAGAATACTCCAAAATATTCTTGTAACAGCTTGTCACCTGGAGTAGAAAATAATTCCATTTTAAAATTACATGATTGCAGTTGTTTCCCCCATTCCAAGGGTTGTAATGATGAAAATAACCTTGCGTATAAACCTGATGGTGGATGTATGCATGTACCAGAAAATTCCTCAGAGTTAAAGAAAGAAAGCCCTAGGAGTCTTGCAGATAAGAGTGACAGAAATAATATTCCTCAACTTTTACAAACTGAAGAAAACTTAATGGGAGTAAATCAGTTATTACTTGAAGAAAATGATTCATACCAAAGTAAAAATAAGGGCTTGCTTTCCTGCGTTCAAAGTGAAAAAAATAAACATTCATTAGAGGAGAGCAGTGTTGGGAGAAAACCCAGAAAAAGGATGAAGGTGTCTGAAAAAGGAGATGAAATGGTTATTAAGATGAAATTCTCTAATGTGTATAACAAATCTGAGCTGGTGTTACAAGAAAACAAAACAGGTGCTGAAGGTAAAGAAACAGAGACTTTAGTGGCTAAAAAAAGTCCTTTAAAAGTTTTGAGAAAAGTAARCAATAACACGCTGTCACCAGTGGATCATTTATTAAGTCTTCCAGAAACAGGGAAAAAAACAAGTCATGAACACCATGTAAATCCTATGTTTCAGAAAACTCTTGAGCCACTTTCAAAAGAAGAAAAAAAGAATGCTTCAGAGCCTTTAGGATGTAAGAGCATGGATCCAGAGGAGTATTTTAAGTGGATGAAAAACTCAATAGTGAAGTCACCTAGCGATTGCCATCCTATTGAAAAGAGAGCTTCGAGGGAAGACTCGAAGAATGAAGCTGAAGAATCWAAATTTAGCTGTCACAGAACAATACCAATGACTGGCAAAAGAACTTGGCCTTGTTATTCATGTGCTAGAATATCTGCCCAGTGTTGGAAAAAGACTTCCTTGCCACAGTCAAATAACTTTCTTCCTGGGTCTCAGGAAAGTTTTAGGCAAGATGATTTTCTTAAACACCAAACAAATCAAACTCACTTAACTGACTCCRAATTGATGCTACAAAGTTCTCTAACAGAAACAAGCAGTGAATCTTCAAGTAGAGAGAAATTGGATTCTAATTTAAGTTGTTTATCTTCAGTCTCTACAGTGGAACCTACTTTAATGGTTATAAAGGAACCTATCATCAATGATAATAAAAAAATGAAGTCAGAGAAACTAAGCAGAAGTGCGTCAGAGGTAGTTTCTAATACTACTGAAGATACTCCATTAACTAATGTGACTCAAAACTTAACAGGAAGTAAAAAAAAAGATAGAGGGAATTTAACAAAACTGAATTTGACAGTGGCTTCCCAGGATGGCCAGGAAGCAAATAGCTCTACAGGCAAAACTATTCATCGAAAAGCATGCATTGCTAAGCAAACACTGGTTGTTCCAGACTTCGTTAAGATGTTGAACACAGGACGGCTGACTAATTTTAAAATTCCCTTACTTAAGAACAAAACAGAAAAAAGAAAAGAAATAAATGCCAAGTCATCAGAGAGAGAAGTATATAGTCCCCTAGAACTTCTTGACAGTTTATCTGGAGCAGAGGTAAGGCAGAATAGGACTAAAGAAAATGTCACCACAGTAACTTCAGGACCTCAATCTTTGAGCATACAAAGTAGTGTAATTCCAGTGCAAGCTGGTTCTGACTCATACTGCAGTAAGAATTCCTGTATTATTTCTCCAAGCTTTTTAAAGCAAGGTAATAGTAATAAACCATCTAACCACATCTCTGAACCAGGCAATATTGTTTCTAATAAGGAAGCTGTTTCTTTCACAGTTGAAAATAATACTATTTCTTGTGATCCTGGGTGTATAAAGAAAAGTCCTGCMTTCTGCTCTAGTGAACAAGAAACATTCAAAGCAGTTTCCGCTGAAGTTAGTGGTAGAAAAATGACTAAGAACTTTTCAGAAATTGAAGTGGGGTTTCCAGATATTCTTAAAGCGTATGAAGATGATGTCCTCTTAATTGATGTAATTCAAGATGACCCAGACCTCTTTGGAGTCTCCAATGAAGGGGAGCTGTCTTTTACTTCCGAGGTTCCCATGATAAGCCAGGAGCCCAGTGTTGCCGAAGAGCACCAGTCAACAGACTCCAAGCACATGGAACTTCCAGAAAAAAAAGAACCAAGTGATGACTTGAGGATAATGGCTGATTTTATAAAAATGATACGTGTTCATTATATTAAAAGTGAATAA

Related Sequences

bmy_03319T0 SequenceType object (3)

Length: 957 aa      View alignments
>bmy_03319T0
MLRSRTSGPARAPGREGDARGPRKRGRRPGPGEAGGCGPEAGGRKESRQKRRMVARASGREEVESDKSGEAFGAGKASARRRVEGPGGQVGSSDPSDRPGLEAAKEAELPLQSGRHTKEKRKVTEASRDDPQPGIDLVRKESLTSSESFQTVECSEFQSMAFLQSLGKEGLVKSIKRRIRIKKFKSLERPSLKITENKATQNSKVEFQDELYKNTPKYSCNSLSPGVENNSILKLHDCSCFPHSKGCNDENNLAYKPDGGCMHVPENSSELKKESPRSLADKSDRNNIPQLLQTEENLMGVNQLLLEENDSYQSKNKGLLSCVQSEKNKHSLEESSVGRKPRKRMKVSEKGDEMVIKMKFSNVYNKSELVLQENKTGAEGKETETLVAKKSPLKVLRKVXNNTLSPVDHLLSLPETGKKTSHEHHVNPMFQKTLEPLSKEEKKNASEPLGCKSMDPEEYFKWMKNSIVKSPSDCHPIEKRASREDSKNEAEESKFSCHRTIPMTGKRTWPCYSCARISAQCWKKTSLPQSNNFLPGSQESFRQDDFLKHQTNQTHLTDSXLMLQSSLTETSSESSSREKLDSNLSCLSSVSTVEPTLMVIKEPIINDNKKMKSEKLSRSASEVVSNTTEDTPLTNVTQNLTGSKKKDRGNLTKLNLTVASQDGQEANSSTGKTIHRKACIAKQTLVVPDFVKMLNTGRLTNFKIPLLKNKTEKRKEINAKSSEREVYSPLELLDSLSGAEVRQNRTKENVTTVTSGPQSLSIQSSVIPVQAGSDSYCSKNSCIISPSFLKQGNSNKPSNHISEPGNIVSNKEAVSFTVENNTISCDPGCIKKSPAFCSSEQETFKAVSAEVSGRKMTKNFSEIEVGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFTSEVPMISQEPSVAEEHQSTDSKHMELPEKKEPSDDLRIMADFIKMIRVHYIKSE*