Sequence detailsbmy_03406 (Coding sequence)

Part of scaffold_95 (SequenceType object (1))

For more information consult the page for scaffold_95 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEMA4AENSTTRG00000001397 (Bottlenosed dolphin)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000001314, Bottlenosed dolphin)

Protein Percentage 97.11%
cDNA percentage 98.03%
Ka/Ks Ratio 0.30962 (Ka = 0.0123, Ks = 0.0397)

SEMA4AENSBTAG00000012228 (Cow)

Gene Details

semaphorin-4A precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000016223, Cow)

Protein Percentage 90.29%
cDNA percentage 91.6%
Ka/Ks Ratio 0.23378 (Ka = 0.0518, Ks = 0.2217)

SEMA4A (Minke Whale)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

External Links

Gene match (Identifier: BACU003945, Minke Whale)

Protein Percentage 98.56%
cDNA percentage 99.17%
Ka/Ks Ratio 0.40494 (Ka = 0.0055, Ks = 0.0136)

Additional orthologs identified in other species via the OPTIC pipeline.

SEMA4A (Human)   Sema4a (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2289 bp    Location:1056302..1080713   Strand:+
Raw sequence 
>bmy_03406
ATGGCCCTTCCAGCCCTGGGCCTGGACTCCTGGAGCCTCCTGGGCCTTTTCCTCTTCCAGCTGCTCCTGCTGCTTCTGCCACCACCGACGACCGCACGGGGTGACGGGCAGGGGCCCACACCCAGGGTCAAATACTACGCAGGGGATGGACGCAGAGCTCTTAGCTTCTTCCATCAGAAGGGCCTCCAGGATTTTGACACTCTGCTCCTGAGTGGTGATGGAGACACTCTCTATGTGGGGGCTCGAGAGGCCATTCTGGCTTTGAATATCCAGGATCCAGGGGTACCAAGGCTGAAGAACATGATACCCTGGCCAGCCAGTGACCGAAAAAAGAGTGAATGTGCCTTTAAGAAGAAGAGCAATGAGACACAGTGTTTCAACTTTATTCGTGTCCTGGTCTCCTTCAATGCCACCCATCTCTACGCCTGTGGCACCTTCGCCTTCAGCCCTGCTTGTACCTTCATTGAACGCCAAGATTCCAACCTGTTGCCCATCTCGGAGGACAAGGTTGTAGAGGGGAAAGGCCAAAGCCCCTTCGACCCCGCCCATAAGCACACGGCTGTCCTGGCAGACGGGATGCTCTATTCCGGCACCATGAACAACTTCCTGGGCAGTGAGCCCATCCTGATGCGCACACTGGGATCCCAGCCTGTCCTCAAGACAGACAATTTCCTCCGCTGGCTGCAACCGGACGCCTCCTTCGTGGCAGCCATCCCTTCGACCCACGTCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTTTGAGTTCTTCGAGAAGCTCCACACATCCCGGGTGGCCAGAGTCTGCAAGAACGACGTGGGCGGCGAAAAGCTGCTGCAGAAGAAGTGGACCACCTTCTTGAAGGCCCAGCTACTCTGCGCCCAGCCGGGGCAGCTGCCCTTCAACGTCATCCGTCACGCTGTCCTGCTGGCAGACAATTCCTCCACCGATCCCTATGTCTACGCTGTCTTCACCTCTCAGTGGCAGGTTGGTGGGACCAGGAGCTCTGCTGTCTGTGCTTTCTCACTCAAGGACATCAAGCATGTCTTTGAGGGGAAGTATAAGGAATTGAACAAAGAGACTTCACGCTGGACTACTTACGGGTTCCCTGATATCAGTCCTCGGCCAGGCAGCTGCTCGGAGAGCCCCTCCTCTGATAAAGCCTTGACCTTCATGAAGGACCATTTCCTGATGGATGAGCCGGTGGTGGGGACACCCCTGCTGGTGAAGTCTGGTGTGGAGTACACACRGCTTGCGGTGGAGACAGCCCAGGGCATTGACRGGAATAGCCATCTGGTCATGTACCTGGGCACCAGCACAGGGTCCCTCCACAAGGCTGTGGTGAGTGGGGACAAGAACGCTTATCTGGTGGAGGAGATCCAGCTGTTCCCTGACCCTGAGCCTGTTCGCAACCTGCAGCTGGCCCCCACCCAGGGCGCAGTGTTTGCAGGCTTCTCAGGAGGCATCTGGAGGGTTCCCCGAGCCAACTGTAGTGTCTACGAGAGCTGTGTGGACTGTGTCCTTGCCCGGGACCCTCACTGTGCCTGGGACCCGGAGTCCCAAATCTGCCGCCTCCTGCCCACCACCATCCCGAAGTCCTGGAAGCAGGACATGGAGCGTGGGAACCCAGAGTGGGCATGTGCCAATGGCCCCGTGGACAGGAGCGGAAGGCCTCGGAGCAGCCCCCAAATCATTAAAGAAGTCCTGGCTGTCCCCAACTCCATCCTGGAGCTTCCCTGCCCCCATCTCTCAGCTCTGGCCTCTTACCACTGGAGTCACGGCACAGCAGCGATCCCGGACGTCTCTTCCACAGTCTACCGTGGCTCCCTCTTGCTGCTACTGCGAGATGGGGTGGGGGGTCTCTATCAGTGCTGGGCCACTGAGAATGACTTCTCATACCCTGTGGTCTCCTACTGGGTAGACAGTCAGGACCAACCCCTGGCCTTGGATCCTGAACTGGCGGGCATTCCCCGGGAACGCATGGAGGCCCCGCTGACCACAGTCGGTGGTGGGGCTGCCCTGGCTGCCCCGCGGTCCTACTGGCCCCACTTCCTCACCGTCACTGTACTCCTTGCCTTAGTGCTTTCAGGAGCCCTCATCCTCCTCCTCGCCTCCCCTTTGGGGGCACTCCGAGCCCGGGGCAAGGTCCAAGGCTGTGGGACCCTGCCCCTCGGGGAGAAGGCCCCATTGAGCAGGGAGCAGTGCCTCCAACCCCCCAAGGAATGCAGGACCTCTGCCAGTGATGTGGACGCCGACAACAACCTCCAGGGCACTGAGGTGGCTTAA

Related Sequences

bmy_03406T0 SequenceType object (3)

Length: 763 aa      View alignments
>bmy_03406T0
MALPALGLDSWSLLGLFLFQLLLLLLPPPTTARGDGQGPTPRVKYYAGDGRRALSFFHQKGLQDFDTLLLSGDGDTLYVGAREAILALNIQDPGVPRLKNMIPWPASDRKKSECAFKKKSNETQCFNFIRVLVSFNATHLYACGTFAFSPACTFIERQDSNLLPISEDKVVEGKGQSPFDPAHKHTAVLADGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDNFLRWLQPDASFVAAIPSTHVVYFFFEETASEFEFFEKLHTSRVARVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNVIRHAVLLADNSSTDPYVYAVFTSQWQVGGTRSSAVCAFSLKDIKHVFEGKYKELNKETSRWTTYGFPDISPRPGSCSESPSSDKALTFMKDHFLMDEPVVGTPLLVKSGVEYTXLAVETAQGIDXNSHLVMYLGTSTGSLHKAVVSGDKNAYLVEEIQLFPDPEPVRNLQLAPTQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESQICRLLPTTIPKSWKQDMERGNPEWACANGPVDRSGRPRSSPQIIKEVLAVPNSILELPCPHLSALASYHWSHGTAAIPDVSSTVYRGSLLLLLRDGVGGLYQCWATENDFSYPVVSYWVDSQDQPLALDPELAGIPRERMEAPLTTVGGGAALAAPRSYWPHFLTVTVLLALVLSGALILLLASPLGALRARGKVQGCGTLPLGEKAPLSREQCLQPPKECRTSASDVDADNNLQGTEVA*