Sequence detailsbmy_03453 (Coding sequence)

Part of scaffold_100 (SequenceType object (1))

For more information consult the page for scaffold_100 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RIF1ENSTTRG00000011190 (Bottlenosed dolphin)

Gene Details

RAP1 interacting factor homolog (yeast)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000010614, Bottlenosed dolphin)

Protein Percentage 94.48%
cDNA percentage 96.48%
Ka/Ks Ratio 0.45422 (Ka = 0.0282, Ks = 0.0621)

RIF1ENSBTAG00000021020 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000027997, Cow)

Protein Percentage 85.33%
cDNA percentage 90.38%
Ka/Ks Ratio 0.39836 (Ka = 0.0796, Ks = 0.1998)

RIF1 (Minke Whale)

Gene Details

RAP1 interacting factor homolog (yeast)

External Links

Gene match (Identifier: BACU019797, Minke Whale)

Protein Percentage 95.56%
cDNA percentage 97.31%
Ka/Ks Ratio 0.56327 (Ka = 0.0227, Ks = 0.0403)

Additional orthologs identified in other species via the OPTIC pipeline.

RIF1 (Human)   Rif1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 6219 bp    Location:172222..117555   Strand:-
Raw sequence 
>bmy_03453
ATGACGGCCCCGGGCCGCAGCCCCCTCGTGCCGCTGTTGGAGACTTTGGAAGACCCTTCCGCCTCCCATGGAGAGCAGACCGACGCTTACCTGACTCTGACCAGACCATGTTTTTCTGAGTTAAATGTTTGGAAATTGCAAGGAAAGGGTAACAACTGGTACAAAACGATAAAGATTTATCGTATGACTGGAGAAGATGGAAAAGAAATCATTATAGAAATTGAGAAGAAACTTCCTCAGCTATTCAGAGTTTTAAAGGTATCTAGTGTAATTGATTCATTAGAAATAGTCTTTAATAGAGGAGAGATGCATTCTGCTGTTGTGGATTATGAAGCATTAAATGTCATCATAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGTCAATTAGATGGGCAAAATTGGTCATACCTTTAGTGGTTCATTCGGCCCAAAAGGTACATTTGCGGGGAGCTACTGCTCTAGAGATGGGAATGCCGTTGTTACTTCAGAAACAACAAGAAATAGCATCTATCACAGAGCAGCTTATGACTACCAAATTACTTTCGGAACTCCAGAAGCTATTTATGAGTAAAAATGAGACTTATGTGTTAAAATTATGGCCTTTGTTTGTCAAACTTCTTGGGAAGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTATTACAGCTAGAAGAACTGGGATTTCGTAGTGGAGCACCCATGATTAAAAAAATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGATGCAGTTGTCAATGCTATTTGGAAGGAGCTAGTTAGCTTGGTGAAGTCAGTTATTGAATCTGGTAACAAAAAAGAGAGACCAGGTTCTGAAGTTTTGACTCTTCTATTAAAATCTTTGGAAAGCGTAGTGAAGTCAGAAGTATTTCCTGTATTGAAAACACTGGTTCTCATGGAAATTACAATTAAAGGACTTCCTCAGAAAGTATTAGGTTCTCCAGCATATCAGGGAACTCCTGCTTTGTTCTTAATTCAGTTAATTTTCAATAATAATCTATTGGAATGTGGTGTAGAAGATGAAAGGTTTTTTCTCAACCTGGAAACACTTGTAGGCTGTGTTCTTTCTGGTCCAACTTCACCACTAGCTTTCAGTGACTCTGTCTTAAATGTTATTAATCAAAATGCAAAGCAGTTGGAAAACAAGGAGCATCTTTGGAGAATGTGGAGTATTATAGTCACCCCATTAACTGAATTGATAAATCAGACCAATGAAGTGAATCAAGGTGATGCCTTAGAACATAATTTTAGTGCCATCTATTGTGCACTGACTTTACCAATAAACCATATTTTTTCAGCACAAAAAATTCCAGCGGCCACCATGAAGACCTTACTTAAAACTTGGTCAGAATTATATAGAGCATTTGCTCGCTGTGCAGCTTTGGTGGCAACTGCAGAGGAGAATTTGTGCTGTGAGGAACTTTCTTCCAAGATAATGTCCAGTTTGGAAGATGAAGGCCTTTCAAATTTATTGTTCTTGGATAGGATCACTCATATTATTACTGTAATGGTTGATTGCATCGACTTTTCACCATATAATATTAAGTATCAGCCCAAAATTAAATCACCACAGAGACCTTCGGATTGGTCCAAAAAGAAGAAGGAGCCCTTGGGGAAATTGGCTTCTTTATTTAAACTTATCGTGAGAGTGATCTATTCTTTCCACACTCTGAGCCTCAAGGAAGTACATTCTGATACTCTCCTCGCTATTGGCAACTCAATCACCAGCATTCTTTCCAATGTACTTGGACATATTTCTTTGCCTTCTATGATCCGAAAAATGTTTGCAACTTTAACAAGACCTCTGGCATTATTTTACAAAAACTCAAAGTTTGATGAAGTTCCTAAAGTGTATAGTTGTATGAACAACAAGTTAGAAAAGCTACTAGGAGAAATTATTGCTTGTCTACACGTCAGCTACACTGGGACTTATGACAGTGAACTTCTTGAACAGATCTCGCCATTATTATGCATAGTATTTTCACACAAGAATAAACAGATTAGAAAACAAAGTGCTCAGTTCTGGAATACCACATTTGCTAAAGTGACGATGTTGATTTATCCTGAGGAGTTAAAACCAATACTAAAACAAGCCAAACAAAAATCTCTGCTTCTGTTGCCTGGTTTGGAAAATGTTGAAATTATTGAGGAATCCAGTGGACCATATTCAGATACATTGAAACTAGAGTCTTCAACTCCAAAAGCAAAGAGTGAAATGCCTTTGGAAGAGGAAAAGTCTACTGACTTTGTGTTTATACCTCCAGAAGGAAAAGAAACAAAGGAAAGAATACTAACTGAACACCAGAAAGAAGTACTCAAAACGAAGAGATGTGATATTCCTGCCATGTATAATAATCTGGATGTTTCACAAGATACTTTATTTTCTCAGTATAGTCAGGAAGAGTCTATGGAAATTCCTACTTTAACGGAAAAATCCAAGGAACATTCCAAGATGATATTTAAGGAGGAACAAAAGGAGAGTGACATTGTCATTGCTCAACATGTCACGGAAAAMTGTGGTATGGATGAACACCTTGAAAAGGCTTCCCTTTCGAATAATGAGTGTGGTTCTATTGAGGAAACCARTCCAGAAATACTGAGCAGTAATGATGCCAGAAAAAAGGCTTTAATTGTATCAAAGAAGACGCCAACTGAATGTGCATCTAGTACAGAAAATACATTTGGTGTCAGCAGTAGCTCGGTTTCTAATGCCACTATTTCTGGAACTCCTCCCCCACAGCCTACAAGTCGAAGGCAATCCTTTATTACTTTGGAGAAGTTTGATGGCTCAGAAAATAGACCCTTTAGTCCATCCCCCTTGAATAACATGTCATCAGCTGTTATAGTGAAAAATAACCAGGAAGGCACAGCTAAAACAGATGATCCACCAAAAGCAAAGAAAAGAGAAGTGGCTCTTTCAAAGTCTGACTCTGAAAAAACAGTGCATGGGATTAAGAGATCAGGCCGAAGGTCAAGTAAGCCTGAACCAATAGGGAATAAAAAGTCTAAGCCCTTGATGAGATCTGATCAGGAGAAAAGTACTCGGGAATCTGTTGATGGCATGGTAGCCTTCGAAAATAACCCACCTGGTTTGCTTAATCAAACAGAATGTGCATTAGATAATCAGGTTCATCTCTCTGAGTCTTCAGTGGAGTATGAGGATACGATGCTTAAACCAACAACAGAAAATACTATACTATTAGAAAACAATACCGTAGAGGAGAAAACCTTAGAAATTAATTTGGAATCCAAAGAAAACACACCCCCAGCCATAATAACAACAGATCAAACAGTAAATGAGGATAGTCATGTTCAGATAACTCCAAATCATAAAACCCTTAGACGATCTTTAAGGCGACGTTCAGAAACAGCAGAGCCAACCACTGATAACCAAGATAAAGAAAATAATCAAAAAAGGGAAAGACGTAAGGAAGAAGAAAAGACTCTGCAGAGGAGTCCATTGCATGTAAAAGATGATGTTTTACCTAAGCAAAAATTGATTTCTGAACAAACTGTACAGGAAAATTTAATTGAGAAAGGAAATAATTTACATGAGAAGACTTCTGGGGAAACCAGYGCTAATGCTGAAATTGATGAAAATAGAAGAAAGCCAGATCTTGAGACTACTAAATCTGAGGGAGATGGTGCCCAGGACATTGCAGATAAATCCTCTGAGAAACCAGTAAGGGGACGAACACGGTATCAAACAAGAAGAGCATCCCAGGGTTTACTTTCCAGCATTGAAAACTCAGAATCTGATAGTTCTGAGGCAAAAGAAGAAGGTTCTAAAAAGAAAAGATCTGGAAAATGGAAAAACAAAAGCAGTGACAATGTTGACATTGAAGATCAAGAAGAGAAGATGGTAAAACAGGAATGTATAAAGGTTGAAAGTCAGACACATGATTATAAAGGGAATTCTGAAGTAGACAAAGATACAAAATCTCAGATCTGTGAAAAAAGAGAAGAAAGTAATACTGTAACTCTTCAAGATTCTWCAATATCTTCAGAATTATTACARGTTTCTGGTGACGTATCAAATACTTATGAGGGAAAGAGTAAAASTAACAAATGTGCAGAACATTCCTTTTCAAATCCTTCTGTACCAGAATCAAATCTAAGGACTAGAAATGCCAATAAAAGATTACATAAGCGAGAATCTCTAGAAAATAGTGTGGGTGAATCCTCAAAAACAGAAACATCAAACATTTCTTTGCTTTCTGAAAAAACTCTTGAAATACTTGAATGCCAACACAAGAGAAGTAGGAGGGTGAGGAGATCTAAAGGTTGTGATTGCTGTGGAGAAAAATCACAACCTCAGGAAAAGTCATTCATTGGGTTAAAGAATACAGAGAATTATGATGTAAAAGTCAGCGAAACAAAAAAGACAGATGTGCAGACACCTGTAACTATATCAGAAACTTCTAAAGCTGATCTGTACTCAGAAGTAAAACTTTCAGATGAGCAKCATAGTGTGAATTTTCATTTGGATCTCAAGGAGGAGAATGATACTATTAATGATTCATTAATTATATCTGAAACTGAGTTGAAAGAAAATACTATTCAAGACTTTCTTCCTTCTGAAATGGTAAATTTTAAAGAAGAAACTTGTGATAGGGATTCTGAGGAAGCAATATCTCTTGAAAGCCAGGAGCCATCTAATAAAAAATGTAAAACTATTGACCCATGTTTAGGCGATTCCAAAGATATTTCACTGGAATGTTTTACTTTGGAGACCAAAGAAGAAAAGCCAGAGGCTATCCCCAAAAAGGAATTGAGTATTATAGAGAACCTTGTTAATGTTGAAGCAAATGCAGAATTGAATCCAGGAGGAGTAGATGCTACGGAATTGAATGCAGAAAATGATAAATCTGAAGCTAGCTTCTCTGAACAAAAGAGTGTCAAAACTGATATTTCAGAGGAAGAGGTAACAGAGGAAAACAGTCAAAGAACGGATGCACCTGAAGAACTGAGTGCTGACGAAGCAATAACTGAGGAATTTAATTCAGGTATTGGTCATTCTGATAATACCACACCTGTAAAAGTGAGTGCTCAGTTAGAGATTTCTGAACAAATAGCAGTTGGGGAACTAGACAGAGGAAGTGATGAATCTGATCCAGGCTCATCTGGAGAAATGAATGCTGAAATGGAAAATTGTGAAGAAACAGTGATTGGTGAGGTGACTGCTGAAACTGACTGTGTGAATGAAACAGAGGATGAGGACTTAACTACCAAAGCCTCTAAGCAGATAGAAGCTGAAACAAAGAGATTGAATGTAGAAATCGATAGCTTTGTTCCCGACACACTTGAGATGAGCACTGAAGAAGGAGAGGTTGACTCTAATAAAACTGAAACAAATATTGAACCTAATAAATTTGAGGAAACAAAATTAGGTGACAATCAGATGGTAGCGGGAAATGATGGAATTTTACCRGAAGTTCACCATACTTCAGAGAAAGTGGAGGAGACACCACAACCTCTGACAGCTGAAACAGCTGTTTCTGAACTGGTATCAGAAGACAATAATACATCTCCTCAAAAATTAARGGATCTTGATCCTTTACTCATGTCAGCAAATGACAGTCCTAGTGGCATGCAGACACGCTGTGTCTGGTCTCCTTTGGCTTCTCCATCCACCAGCATTTTAAAGAGAGGACTAAAAAGACCCCAAGAAGATGAAATCTCATCACCTGTTCACAAGGTTCGCCGTGTCTCCTTTGCAGATCCTATATACCAAGCAGGATTGGCAGATGACATTGATAGGCGATGCTCTATTGTTAGGTGCCATTCTTCAAATAGTTCTCCCATAGTAAAAAGTGTTAAAACTTCACCTACTGCGCAATCTAAGGTGAAGTCTCGTGGACTAGAAGAGATTCCAGTTTTTGATATTTCCGAAAAAACAGTAAATGGAATGGAAAATAAATCTATTTCTCCTGATGAAGAAAGACTTGCCTCAGATTTAATTGATCCTGTTGCTTTAGAGACTCCGTTATCTAAAAATCTTGTGGCCCAGATTAGTGCACTTGCTCTTCAACTAGATTCAGAAGATCTCCATAATTATTCAGGAAGCCAGCTATTTGAAATGCATGAGAAACTTGGTAACATGGCAAACTCTATAATTAAAAATCTGCAGTCACGTTGGAGGTCACCAGCCCATGAAAATTCTATTTAG

Related Sequences

bmy_03453T0 SequenceType object (3)

Length: 2073 aa      View alignments
>bmy_03453T0
MTAPGRSPLVPLLETLEDPSASHGEQTDAYLTLTRPCFSELNVWKLQGKGNNWYKTIKIYRMTGEDGKEIIIEIEKKLPQLFRVLKVSSVIDSLEIVFNRGEMHSAVVDYEALNVIIRLIEQAPIQMGEESIRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLLSELQKLFMSKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPDAVVNAIWKELVSLVKSVIESGNKKERPGSEVLTLLLKSLESVVKSEVFPVLKTLVLMEITIKGLPQKVLGSPAYQGTPALFLIQLIFNNNLLECGVEDERFFLNLETLVGCVLSGPTSPLAFSDSVLNVINQNAKQLENKEHLWRMWSIIVTPLTELINQTNEVNQGDALEHNFSAIYCALTLPINHIFSAQKIPAATMKTLLKTWSELYRAFARCAALVATAEENLCCEELSSKIMSSLEDEGLSNLLFLDRITHIITVMVDCIDFSPYNIKYQPKIKSPQRPSDWSKKKKEPLGKLASLFKLIVRVIYSFHTLSLKEVHSDTLLAIGNSITSILSNVLGHISLPSMIRKMFATLTRPLALFYKNSKFDEVPKVYSCMNNKLEKLLGEIIACLHVSYTGTYDSELLEQISPLLCIVFSHKNKQIRKQSAQFWNTTFAKVTMLIYPEELKPILKQAKQKSLLLLPGLENVEIIEESSGPYSDTLKLESSTPKAKSEMPLEEEKSTDFVFIPPEGKETKERILTEHQKEVLKTKRCDIPAMYNNLDVSQDTLFSQYSQEESMEIPTLTEKSKEHSKMIFKEEQKESDIVIAQHVTEXCGMDEHLEKASLSNNECGSIEETXPEILSSNDARKKALIVSKKTPTECASSTENTFGVSSSSVSNATISGTPPPQPTSRRQSFITLEKFDGSENRPFSPSPLNNMSSAVIVKNNQEGTAKTDDPPKAKKREVALSKSDSEKTVHGIKRSGRRSSKPEPIGNKKSKPLMRSDQEKSTRESVDGMVAFENNPPGLLNQTECALDNQVHLSESSVEYEDTMLKPTTENTILLENNTVEEKTLEINLESKENTPPAIITTDQTVNEDSHVQITPNHKTLRRSLRRRSETAEPTTDNQDKENNQKRERRKEEEKTLQRSPLHVKDDVLPKQKLISEQTVQENLIEKGNNLHEKTSGETSANAEIDENRRKPDLETTKSEGDGAQDIADKSSEKPVRGRTRYQTRRASQGLLSSIENSESDSSEAKEEGSKKKRSGKWKNKSSDNVDIEDQEEKMVKQECIKVESQTHDYKGNSEVDKDTKSQICEKREESNTVTLQDSXISSELLQVSGDVSNTYEGKSKXNKCAEHSFSNPSVPESNLRTRNANKRLHKRESLENSVGESSKTETSNISLLSEKTLEILECQHKRSRRVRRSKGCDCCGEKSQPQEKSFIGLKNTENYDVKVSETKKTDVQTPVTISETSKADLYSEVKLSDEXHSVNFHLDLKEENDTINDSLIISETELKENTIQDFLPSEMVNFKEETCDRDSEEAISLESQEPSNKKCKTIDPCLGDSKDISLECFTLETKEEKPEAIPKKELSIIENLVNVEANAELNPGGVDATELNAENDKSEASFSEQKSVKTDISEEEVTEENSQRTDAPEELSADEAITEEFNSGIGHSDNTTPVKVSAQLEISEQIAVGELDRGSDESDPGSSGEMNAEMENCEETVIGEVTAETDCVNETEDEDLTTKASKQIEAETKRLNVEIDSFVPDTLEMSTEEGEVDSNKTETNIEPNKFEETKLGDNQMVAGNDGILPEVHHTSEKVEETPQPLTAETAVSELVSEDNNTSPQKLXDLDPLLMSANDSPSGMQTRCVWSPLASPSTSILKRGLKRPQEDEISSPVHKVRRVSFADPIYQAGLADDIDRRCSIVRCHSSNSSPIVKSVKTSPTAQSKVKSRGLEEIPVFDISEKTVNGMENKSISPDEERLASDLIDPVALETPLSKNLVAQISALALQLDSEDLHNYSGSQLFEMHEKLGNMANSIIKNLQSRWRSPAHENSI*