Part of scaffold_101 (Scaffold)

For more information consult the page for scaffold_101 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SLIRP ENSTTRG00000009328 (Bottlenosed dolphin)

Gene Details

SRA stem-loop interacting RNA binding protein

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008845, Bottlenosed dolphin)

Protein Percentage 81.48%
cDNA percentage 81.48%
Ka/Ks Ratio 0.20381 (Ka = 0.0214, Ks = 0.1048)

SLIRP ENSBTAG00000008135 (Cow)

Gene Details

SRA stem-loop-interacting RNA-binding protein, mitochondrial

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000040631, Cow)

Protein Percentage 92.59%
cDNA percentage 93.52%
Ka/Ks Ratio 0.19585 (Ka = 0.0348, Ks = 0.1776)

SLIRP  (Minke Whale)

Gene Details

SRA stem-loop interacting RNA binding protein

External Links

Gene match (Identifier: BACU010850, Minke Whale)

Protein Percentage 62.24%
cDNA percentage 68.37%
Ka/Ks Ratio 0.4589 (Ka = 0.3647, Ks = 0.7947)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 327 bp    Location:229925..219398   Strand:-
>bmy_03478
ATGACGGCTTCGGCAGCGAGGGCCGCAATGGCACTGCGTACGAATATCCGCCGGCCGGTTGCGTTTGTCAGAAAAATTCCGTGGACCGCGGCCTCGAGTGAACTGAGAGAACACTTTTCACAGTTTGGCCATGTACGAAAGTGCACTGTTCCTTTTGACAAAGAGACTGGCTTTCACAGAGGTATGGGTTGGATCCAATTTTCTTCAGAAGAAGAACTTCACAATGCACTACAACAGGAAAATCATGTTATTGATGGAGTAAAGCTCCATGTTCAAGCTCAAAAACCCAAAGCTTTGCAAGGGGACCAAACATCTGATGAAGAGTAA

Related Sequences

bmy_03478T0 Protein

Length: 109 aa     
>bmy_03478T0
MTASAARAAMALRTNIRRPVAFVRKIPWTAASSELREHFSQFGHVRKCTVPFDKETGFHRGMGWIQFSSEEELHNALQQENHVIDGVKLHVQAQKPKALQGDQTSDEE*