Part of scaffold_102 (Scaffold)

For more information consult the page for scaffold_102 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MKS1 ENSTTRG00000006831 (Bottlenosed dolphin)

Gene Details

Meckel syndrome, type 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006461, Bottlenosed dolphin)

Protein Percentage 94.1%
cDNA percentage 95.41%
Ka/Ks Ratio 0.34008 (Ka = 0.022, Ks = 0.0647)

MKS1 ENSBTAG00000034963 (Cow)

Gene Details

Meckel syndrome type 1 protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000046330, Cow)

Protein Percentage 88.11%
cDNA percentage 88.33%
Ka/Ks Ratio 0.17551 (Ka = 0.0666, Ks = 0.3796)

MKS1  (Minke Whale)

Gene Details

Meckel syndrome, type 1

External Links

Gene match (Identifier: BACU006263, Minke Whale)

Protein Percentage 98.45%
cDNA percentage 98.64%
Ka/Ks Ratio 0.24715 (Ka = 0.008, Ks = 0.0322)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1680 bp    Location:2047995..2059369   Strand:+
>bmy_03554
ATGGCGGAGGCCGTCTGGAGCACTGACACCGGAGAGGCCGTGTATCGCTCTTGGGACCCCGTGCGCAACCTCCGCCTCCGAGTCCACCTGCAAAGAATCACATCAAGCAACTACCTCCATTACCAGCCTGCTGCCCAGCCCGGGAAGGACATCATAGACTTGGCCACTTTTAGGCCTCACCCATCCGCCAGTGGACACCGCCCGGAGGTAGATGAAGAGGAGGAGGTCGTGATTGGGTGGCAAGAGAAGCTCTTCAGCCAGTTTGAAGTAGATCTGTACCAAAATGAAGCAGCCTGTCAGAGCCCTTTGGATCATCAGTACCGCCAAGAGATTCTGAAGCTGGAGCATTTGGATGGCAGGAAGAACCGACGGATCTTTACCTACACTGACTCTGATAGATACACCAATTTGGAGGAGCACTGTCAGAAAATGACCACCGCAGCCAGCGAAATGCCGTCATTCTTGGTCGAGCGAATGGCAAATGTCAGGCGGCGACGGCAGGACAGGCGAGGGATGGAGGGTGGCATCCTTAAGTCACGCATCGTCACCTGGGAACCCTCAGAAGAGTTCATCAGGAACAACCATGTCATCAACACCGCTCTTCAGACAATGTACATCATGGCGGACCTGGGGCCCTATGGAAAGCTTGGCTATAAGAAGTATGAACATGTCCTCTGTACTCTGAAGGTGGACAGTAATGGTGTGATCACAGTAAAACCTGACTTCACTGGCTCCAGAGGACCCTACAGAATCGAGACAGACGGGGAGAAGCAGGAGCTGTGGAAGTATACGATTGACAACGTGTCCTCCCTTGCACAGCCTGAGGAGGAGGAGCGGGAACAGCGTGTGTTCAAGGACCTCTATGGCCGGCACAAGGAGTATCTCAGCAGCCTCGTGGGCACTGACTTTGAGACGACGGTACCAGGTGCCCTCCGGCTCTTTGTAAATGGAGAGGTAGTTTCAGCCCAAGGCTATGAGTTTGACAATCTTTACGTCCACTTCTTCGTGGAATTGCCAACTACTAGCTGGTCAAGCCCAGCATTCCAGCAGCTCTCAGGAATAACACAGACCTGTGCCACCAAGTCCCTGGGAATGGATAATGTGGCTTACTTCTCCTACCCGTTCACGTTTGAGGCCTCCTTCCTCCACGAGGATGAATCTGCCGGTGCTCTCCCGGCATGGCCTGTGCTCTACTGCGAGGTCCTCTCGCTGGACTTCTGGCAGAGGTGTCGCGTGGAAGGCTACGGGGCTGTGGTGCTGCCTGCCACCCCAGGCTCACACACCCTGACAGTCTCTACGTGGAGGCCCCTGGAGCTGGGCCCGGTGGCTGAGCTGAGGAGGGTTTTCATCGGCGGCTCTCTGGAACTGGAGGACCTCTCCTACGTGCGGATACCAGCAACCTTCAAGGGGGAGCGTCTGAGCCGCTTTGGACTCCGCACGGAGACCACAGGCAGTGTCACCTTCCGCCTGCATTGTCTGCAGCAGTCCAGGGCCTTCCTGGAGTCCAGTTCTCTCCGGAAGAGGCTGAGGAGCGTGTTGGACCGTCTGGAGGGATTCAGCCAGCAAAGTTCCATTCACGGTGTGCTAGAAGCCTTCCGTCGAGCCCGGCGCCGCATGCAGGAGGCCCGAGAAAGCCTTCCCCAGGACCTCGGGAGCCCCTCGGGGGCCACGGTCTCCTAG

Related Sequences

bmy_03554T0 Protein

Length: 560 aa      View alignments
>bmy_03554T0
MAEAVWSTDTGEAVYRSWDPVRNLRLRVHLQRITSSNYLHYQPAAQPGKDIIDLATFRPHPSASGHRPEVDEEEEVVIGWQEKLFSQFEVDLYQNEAACQSPLDHQYRQEILKLEHLDGRKNRRIFTYTDSDRYTNLEEHCQKMTTAASEMPSFLVERMANVRRRRQDRRGMEGGILKSRIVTWEPSEEFIRNNHVINTALQTMYIMADLGPYGKLGYKKYEHVLCTLKVDSNGVITVKPDFTGSRGPYRIETDGEKQELWKYTIDNVSSLAQPEEEEREQRVFKDLYGRHKEYLSSLVGTDFETTVPGALRLFVNGEVVSAQGYEFDNLYVHFFVELPTTSWSSPAFQQLSGITQTCATKSLGMDNVAYFSYPFTFEASFLHEDESAGALPAWPVLYCEVLSLDFWQRCRVEGYGAVVLPATPGSHTLTVSTWRPLELGPVAELRRVFIGGSLELEDLSYVRIPATFKGERLSRFGLRTETTGSVTFRLHCLQQSRAFLESSSLRKRLRSVLDRLEGFSQQSSIHGVLEAFRRARRRMQEARESLPQDLGSPSGATVS*