Sequence detailsbmy_03610 (Coding sequence)

Part of scaffold_105 (SequenceType object (1))

For more information consult the page for scaffold_105 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USH1CENSTTRG00000015089 (Bottlenosed dolphin)

Gene Details

Usher syndrome 1C (autosomal recessive, severe)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014306, Bottlenosed dolphin)

Protein Percentage 87.71%
cDNA percentage 90.39%
Ka/Ks Ratio 0.53649 (Ka = 0.0714, Ks = 0.1332)

USH1CENSBTAG00000000986 (Cow)

Gene Details

harmonin

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000053819, Cow)

Protein Percentage 91.62%
cDNA percentage 90.79%
Ka/Ks Ratio 0.18688 (Ka = 0.0533, Ks = 0.2854)

Additional orthologs identified in other species via the OPTIC pipeline.

USH1C (Human)   Ush1c (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2760 bp    Location:734666..693137   Strand:-
Raw sequence 
>bmy_03610
ATGTGCTATCTGAGCGAGTGGCCTAAATCCTTTCTGAAAGCAGTTATCCGGCACTACAGCCACCATCAGGTGGATTTTCTGATTGAAAATGATGCAGAAAAGGACTATCTCTACGATGTGTTGCGGATGTACCACCAAACGATGGACGTGGCCGTGCTTGTGGGAGACCTGAAGCTGGTCATCAACGAGCCCAGCCGCCTGCCCCTGTTTGACGCCATCAGGCCTCTGATCCCACTGAAGCACCAGGTGGAGTACGACCAACTAACCCCCCGGCGCTCCAGGAAGCTGAAGGAGGTGCGTCTGGACCGGCTGCACCCCGAAGGCCTCGGCCTTAGCGTGCGTGGCGGCCTCGAGTTCGGCTGCGGGCTCTTCATCTCCCACCTCATCAAAGGCGGCCAGGCAGACAGCGTCGGGCTCCAGGTAGGGGACGAGATCGTCCGGATCAATGGGTATTCCATTTCCTCCTGCACCCATGAGGAGGTCATCAACCTCATCCGCACCAAGAAGACTGTGTCCATCAAAGTGAGACACATYGGCCTGATCCCTGTGAAGAGCTCTCCCGATGAGCCCCTCAAATGGCAGTATGTGGATCAGTTTGTGTCGGAATCTGGGGGTGGGCGGACCAGCCTGGGCTACCCCAGCAGTCAGGAAAACAAGGAGAAGAAGGTCTTCATCAGCCTGGTGGGCTCCCGGGGCCTTGGCTGCAGCATTTCCAGCGGCCCCATCCAGAAACCCGGCATCTTCATCAGCCACGTGAAGCCTGGCTCCCTGTCTGCTGAGGTGGGGTTGGAGACAGGGGACCAGATTGTCGAAGTCAATGGCATCGACTTCTCCAACCTGGACCACAAGGAGGCCGTGAACGTGCTGAAGAGTAGCCGCAGCCTGACCATCTCCATCGTAGCTGGAGCTGGCCGGGAGCTGTTCATGACAGACCGGGAGCGGCTGGCAGAGGTCCGGCAGCGCGAGCTGCAGCGACAGGAGCTTCTGATGCAGAAGCGGCTGGCGATGGAATCCAACAAGATCCTCCAGGAGCAGCAGGAGATGGAGCGGCAAAGGAAAAAGGAAATTGCCCAGAAGGCAGCAGAGGAAAATGAGAGATACCGGAAGGAGATGGAACAGATCGTGGAGGAGGAAGAGAAGTTTAAGAAGCAGTGGGAAGAAGACTGGGGCTCAAAGGAACAGCTCCTGTCGCCTAAAACCATCACCGCCGAGGTGCACCCAGTACCCCTTCGCAAGCCAAAGTATGATCTGGGAGTGGACCCCGAGTTTGACCCGGCAGATGACCTGGACGGAGGCACGGAAAAGCAGGGAGAGCAGAAAGGAAAGGATAAGAAGAAAGCCAAGTATGATAGCCTTCAGGAGTTGAGAAAGAATAAGAAGGAACTGGAATTTGAGCAAAAGCTTTACAAAGAGAAAGAGGAAATGCTAGAGAAGGAAAAGCAACTGAAGATCAACCGGCTGGCCCAGGAGGTATCGGAGACAGAGCGGGAAGACCTTGAGGAATCGGAAAAGATTCAGTATTGGGTGGAAAGGCTCTGTCAGACGCGCCTTGAGCAGATTTCCTCTGCTGATACTGAGATTTCAGAGATGACCACAGGGCCCCCGCCTCCCCCGCCTTCTGTGTCTCCCCTGGCCCCACCCCTGAGACGCTTCGCAGGTGGGCTGCACCTCCACACCACTGACCTGGATGACATCCCCTTGGACATGTTCTACTATCCCCCCAAGACTGCTTCTGCCTTGCCTGTGATGCCCCACCCTCCAGCCTCCAACCCACCCCCCAAGGTCCCCGCGCCCCCTGTCCTTCCCTCATCGGGCCGCCTGAATGCCTCATCCTCACCCTGGGTGCAACGCACTCCACCCCCCATTCCCATCCCTCCCCCACCATCCATTCCTACCCAAGATCTCACTCCTACCCGCCCGCTGCCCTCGGCACTGGAAGAGGCACTAGGCAACCACCCCTTCCGCGCTGGGGAGACAGGCAATTCAGCAGAGGACTGGGAGGCAAAGAACCACAGTGGGAAGCTGGCCAACTCTCCCGTCCCTGAACGGAGCTTCCCACCCACCGCAAAGACATTTTGCCCAAGCCCACAGCCTCCACGAGGCCCTGGCGTGTCCACCATCTCCAAACCTGTCATGGTCCACCAGGAGTCCAACTTCATCTACAGGCCAGCTGTGAAATCCGAGGTCCTGCCACAGGAGATGTTGAAGAGGATGGTGGTTTATCAGACAGCGTTCCGACAAGATTTCCGGAAATACGAGGAAAGCTTTGACCCCTACTCCATGTTCACCCCGGAGCAGATCGTAGGAAAGGATGTCCGGCTCCTGCGCATTAAGAAGGAGGGAGCCTTAGACCTGGCCCTGGAAGGCGGTGTGGACTCCCCGATCGGGAAGGTGGTCGTCTCGGCTGTTTACGAGGGCGGAGCCGCTGAGCGGCACGGTGGCATTGTGAAAGGGGATGAGGTCATGGCCATCAATGGCAAGATCGTGACGGACTACACCCTGGCTGAAGCTGAGGCTGCCCTGCAGAAGGCCTGGAATCAGGGGGACTGGATCGACCTTGTCATTGCCGTCTGTCCCCCCAAGGAGTATGACGATGAGCTTTCAGAGGAGAAACCAAACCCACCCGTAGAAGCCAGTGAGCTCTGGACCCACCCTCCTGGACACCATGCCTGGAACCAGCTGAGCCACCGCAGCCTGCAGGCACCTGGAAACCCACAGCCAGCACCCAGGGATTGCAGACTCCCTCTGGCCCTGAAGTAG

Related Sequences

bmy_03610T0 SequenceType object (3)

Length: 920 aa      View alignments
>bmy_03610T0
MCYLSEWPKSFLKAVIRHYSHHQVDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTKKTVSIKVRHIGLIPVKSSPDEPLKWQYVDQFVSESGGGRTSLGYPSSQENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLETGDQIVEVNGIDFSNLDHKEAVNVLKSSRSLTISIVAGAGRELFMTDRERLAEVRQRELQRQELLMQKRLAMESNKILQEQQEMERQRKKEIAQKAAEENERYRKEMEQIVEEEEKFKKQWEEDWGSKEQLLSPKTITAEVHPVPLRKPKYDLGVDPEFDPADDLDGGTEKQGEQKGKDKKKAKYDSLQELRKNKKELEFEQKLYKEKEEMLEKEKQLKINRLAQEVSETEREDLEESEKIQYWVERLCQTRLEQISSADTEISEMTTGPPPPPPSVSPLAPPLRRFAGGLHLHTTDLDDIPLDMFYYPPKTASALPVMPHPPASNPPPKVPAPPVLPSSGRLNASSSPWVQRTPPPIPIPPPPSIPTQDLTPTRPLPSALEEALGNHPFRAGETGNSAEDWEAKNHSGKLANSPVPERSFPPTAKTFCPSPQPPRGPGVSTISKPVMVHQESNFIYRPAVKSEVLPQEMLKRMVVYQTAFRQDFRKYEESFDPYSMFTPEQIVGKDVRLLRIKKEGALDLALEGGVDSPIGKVVVSAVYEGGAAERHGGIVKGDEVMAINGKIVTDYTLAEAEAALQKAWNQGDWIDLVIAVCPPKEYDDELSEEKPNPPVEASELWTHPPGHHAWNQLSHRSLQAPGNPQPAPRDCRLPLALK*