Sequence details bmy_03615 (Coding sequence)

Part of scaffold_105 (Scaffold)

For more information consult the page for scaffold_105 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TPH1 ENSTTRG00000013891 (Bottlenosed dolphin)

Gene Details

tryptophan hydroxylase 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013173, Bottlenosed dolphin)

Protein Percentage 97.05%
cDNA percentage 96.52%
Ka/Ks Ratio 0.24042 (Ka = 0.0225, Ks = 0.0935)

TPH1 ENSBTAG00000005343 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000007030, Cow)

Protein Percentage 95.91%
cDNA percentage 94.09%
Ka/Ks Ratio 0.15253 (Ka = 0.0268, Ks = 0.1757)

TPH1  (Minke Whale)

Gene Details

tryptophan hydroxylase 1

External Links

Gene match (Identifier: BACU005616, Minke Whale)

Protein Percentage 97.95%
cDNA percentage 97.65%
Ka/Ks Ratio 0.33396 (Ka = 0.0164, Ks = 0.0493)

Additional orthologs identified in other species via the OPTIC pipeline.

TPH1 (Human)   Tph1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1323 bp    Location:1213764..1197026   Strand:-
Raw sequence 
>bmy_03615
ATGATTGAAGACAATAAGGAAAACAAAGATCATTCCTTAGAAAAGGGAAGAGCAACTCTCATTTTTTCCTTAAAGAATGAAGTTGGAGGACTTATAAAAGCACTGAAAATCTTCCAGGAGAAGCATGTGAACCTATTACATATTGAGTCCCGAAAATCAAAGAGAAGAAACTCAGAGTTTGAGATTTTTGTTGATTGTGATATCAATAGAGAACAATTGAATGATATTTTTCATCTGTTGAAGTCTCATACTAATGTTCTCTCTGTGAATCTACCAGATAATTTTACTGTGAAGGAAGACGGTATGGAAACTGTTCCTTGGTTTCCAAAGAAGATTTCTGACCTGGACCATTGTGCTAACAGAGTTCTGATGTATGGATCCGAACTGGATGCTGACCATCCTGGCTTCAAAGACAATGTCTATCGTAAAAGACGAAAGTATTTTGCGGACTTGGCTATGAACTATAAACATGGAGACCCCATTCCTAACGTTGAATTCACTGAAGAGGAGATTAAGACCTGGGGAACTGTGTTCCGAGAGCTCAACAAACTTTACCCAACCCATGCCTGCAGAGAGTATCTCAAAAACTTACCTTTGCTTTCTAAATACTGTGGATACCGGGAAGATAATATCCCACAATTGGAAGATGTCTCAAACTTTTTAAAAGAGCGCACAGGTTTTTCCATCCGTCCTGTGGCTGGTTACTTATCACCAAGAGATTTCTTATCAGGTTTAGCCTTTCGAGTTTTTCACTGCACACAGTATTGTGACAACTTGTACCTCTTTTTCAGAGATACCTGCCATGAACTCTTGGGTCATGTCCCCCTTTTGGCTGAACCTAGTTTTGCTCAATTCTCCCAAGAAATTGGCCTGGCTTCTCTTGGAGCTTCAGAAGAGGCTGTTCAAAAACTGGCAACGTGCTACTTCTTCACTGTGGAGTTTGGTCTATGTAAACAAGAGGGGCAGCTAAGAGTCTTCGGTGCCGGCTTACTTTCTTCCATCAGTGAACTCAAACACGCACTTTCTGGACATGCGGAAGTAAAGCCCTTTGATCCTAAGATTACCTGCAAACAGGAGTGTCTCATCACAACTTTTCAGGATGTCTACTTTGTATCTGAAAGCTTTGAAGATGCAAAGGAGAAGATGAGAGAATTTACCAAAACAATCAGGCGTCCATTTGGAGTGAAGTATAATCCGTATACACGGAGTATTCAGATCTTGAAGGACACCAAGAGCATAACCAGTGCCATGAATGAGCTGCAGCATGAGCTTGATGTTGTCAGTGATGCCCTTGCTAAAGTCAGCAGGCAGTTGAGCATCTGA

Related Sequences

bmy_03615T0 Protein

Length: 441 aa      View alignments
>bmy_03615T0
MIEDNKENKDHSLEKGRATLIFSLKNEVGGLIKALKIFQEKHVNLLHIESRKSKRRNSEFEIFVDCDINREQLNDIFHLLKSHTNVLSVNLPDNFTVKEDGMETVPWFPKKISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHGDPIPNVEFTEEEIKTWGTVFRELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKERTGFSIRPVAGYLSPRDFLSGLAFRVFHCTQYCDNLYLFFRDTCHELLGHVPLLAEPSFAQFSQEIGLASLGASEEAVQKLATCYFFTVEFGLCKQEGQLRVFGAGLLSSISELKHALSGHAEVKPFDPKITCKQECLITTFQDVYFVSESFEDAKEKMREFTKTIRRPFGVKYNPYTRSIQILKDTKSITSAMNELQHELDVVSDALAKVSRQLSI*