Sequence detailsbmy_03618 (Coding sequence)

Part of scaffold_105 (SequenceType object (1))

For more information consult the page for scaffold_105 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HPS5ENSTTRG00000013754 (Bottlenosed dolphin)

Gene Details

Hermansky-Pudlak syndrome 5

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000013046, Bottlenosed dolphin)

Protein Percentage 91.29%
cDNA percentage 93.72%
Ka/Ks Ratio 0.6786 (Ka = 0.0528, Ks = 0.0777)

HPS5ENSBTAG00000005147 (Cow)

Gene Details

Hermansky-Pudlak syndrome 5 protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000006797, Cow)

Protein Percentage 88.03%
cDNA percentage 89.84%
Ka/Ks Ratio 0.29553 (Ka = 0.072, Ks = 0.2437)

HPS5 (Minke Whale)

Gene Details

Hermansky-Pudlak syndrome 5

External Links

Gene match (Identifier: BACU005611, Minke Whale)

Protein Percentage 91.07%
cDNA percentage 93.46%
Ka/Ks Ratio 0.67963 (Ka = 0.0626, Ks = 0.0922)

Additional orthologs identified in other species via the OPTIC pipeline.

HPS5 (Human)   Hps5 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2829 bp    Location:1373999..1328021   Strand:-
Raw sequence 
>bmy_03618
ATGACTTTCGTGCCAGTGATACCAGAGTCCTACAACCATGTTCTTGCAGAATTTGAGTCTCTGGATCCATTACTTTCAGCCCTGAGGCTGGACTCCACTCGTCTAAAGTGCACGAGCATAGCTGTGTCTCGAAAATGGTTGGCTTTGGGCAGTTCAGGAGGAGGACTCAATCTCATTCAGAAAGAAGGATGGAAGCACAGGCTTTTTCTTTCACACAGGGAAGGTGCAATTTCTCAGGTTGCCTGTTGTTTACATGATGATGATTATGTTGCTGTGGCTACCAGTCAGGGTCTTGTAGTTGTTTGGGAATTAAATCAAGAGCGTCGTGGGAAACCAGAACGAATTTATGTGTCTTCAGAACACAAAGGCCAAAAAGTTACAGCTCTCTGTTGGGATACAGCTATTCTTAGAGTTTTTATAGGTGATCATGYGGGGAAAGTTTCTGCCATCAAACTCAACACTTCTAAACAAGCAAAGGCGGCTGCTGCCTTTGTGATGTTTCCTGTTCAGACAATAACAACAGTTGACTCCTGTGTTGTCCATTTCGTTTCAAGATCAGAACCTCAGTATGATCATACGGTTGGATCCTCCCAGTCTTTGTCTTTCCCCAAACTCTTACATCTTAGATGTCATACCAGATATGGGAAGTTTAGATTAACAAACGTCAGTGAGCACTGTGTGCTGACTTGGACAGAAAGAGGAATTTATATTTTCCTTCCTCAGAATGTTCAAGTTCTTCTTTGGAGTGAAGTCAAGGATATTCAGGATGTGGCTGTCTGGAAGAATGAGCTGTTCTGTTTGCACCTAAATGGGAAGGTCTCCCATCTTTCCCTGTTATCTGTGGAACGTTGTGTGGAACGCCTGCTAAGGAGAGGCCTGTGGAACCTGGCTGCTCAAACTTGCTGTCTTTTCCAGAATTCTGTCATCGCCAGCAGAGGAAGAAAAACTCTGACTATAGATAAATTGGAACATTTGAAATCTCAGCTGGACTTAACAACCTATGGTGATCTGATTTCCCAACTGGAAGAATTGATCTTAAAATTTGAACCTTTGGATTCAGCTTGTAGCAGTAGAAGAAGCTCCATTTCATCACATGAAAGTTTCAGCATCTTGGACTCTGGTATTTATCGTATCATTAATAGTAGAAGAGGCAGTCAGTCAGATGAAGACTCTTGTTCCCTTCACAGCCAAACCCTCTCAGAAGATGAGAGACTTAAAGAATTCACCTCACATCAAGAAGAGGACCAACCAGATCAGTGTTGTGGCTCACATGGAAATGAAGACAATGTTTCACATGCTTCAGTGATGTTTGAGACAGATAAGAATGAAACTTTTCTCCCCTTCGGCATTCCACTGTCATTTCGTTCTCCATCTCCTCTTGTGTCTCTTCAGGCTGTCAAGGAAAGTGTTTCTAGCTTTGTGCGTAAAACTACTGAGAAGATTGGCACCCTTCATACGAGCCCTGATCTGAAAGTGAAACCAGAACCCAGGGGTGATGAGCAGTCATGTGAAGAGGATGTGGGTCCAGTCACTTGCCCAAAGGAGGAAGACACTGAGACCAAGCTACAGGACCCACTGGTATTGTTTGAACCACAGTCTCTGAGAATGGTTTTACAGGAGTGGCTTTCACAGTTAGAAAAAACATTTGCCATGAAGGACTTTTCAGGCATTTCAGATACTGGCAACTCATCCATGGAATCAAACCAGGGTATGCTATTGCTTGATGAGTCCAAAAAGGGAATATTAGACGAAGAAGATGAAAAAGAAAGAAGGGACTCTTCAGGCAATGAAGAAACTGTTGATCAAGCAGCATGTGAATCTGTAAATAGTCTGAGGGAGTCCCTGGATGATGACATTTTTCAAGTATGTTCTCCATGCAGTATAGCAGACAGTCTTCAGAAGGACCTGGCTGAAATGACAACGTTGTGTTTGGAACTGAATGTACTGAATTCTGAGATCAAAAGTGCAAGTAGACATGTAGACCACACTTTGCAACAGTGCTCTCCTGAAATTCTGGCTTGTCAGTTCCTAAAGAAGTACTTTTTTCTTCTGGACTTGAAAAGAGCAAAGGAGAGCATCAAGCTGAGTTATACTAACAGTCCTTGTGTTTGGGATACTTTTATTGAAGGACTGAAAGATGTCATGTTTCCAGTAATTGATGTAGACTTTAAGCAAACTTTTCATTCATTACCAAAAATGGAAGAAGGAGACCTTCCAACAAGATTAAAGTTATTGGATGACTTGGTCCCTTTTGACAGTCCTTTGCTGATTGCTTATGCTACCCGATTGTATGAGAAATTTGGAGAATCTGCCCTTCGATCCTTAATCAGGTTTTATCCATCCATTTTGCCTTCAGATGTCATGCAACTTTGTCATCATCATCCTGCTCAGTTTTTGGCTTATTTAGACAGTCTGGTAAAATCAAGGCCTGAAGATCAACGGCCATTCTTCCTTGAGTCCCTCCTACAACCAGAGTCTTTAAGATTGGATTGGCTGCTGTTGGCAGTGTCCCATGATGCTCCCCCAAGCACCAGCACTATGGACGATGAAGGAGACCCCAGGCCTCATTCCCACTTGTTTTCCTGGGGTTACAGTCAGCTAATCCTTCATCTAATTAAACTTCCTGCAGATTTTACAACAAAAGAGAAAGTGACTGACATCTGTAGGTCTCATGGGTTGGATCCCAGAGACTGTGGAGGAATGGAAGCTTCTCCTACATCTGGTACAGAACAAGAGCACAAAGCCAGTCCCCCAGAAGTCACCAAATGGGAACTTCAGCGATGGGCCTTCCCCTATCAATGTGGAGAATGTGGCACTCCTGTTAGCTAA

Related Sequences

bmy_03618T0 SequenceType object (3)

Length: 943 aa      View alignments
>bmy_03618T0
MTFVPVIPESYNHVLAEFESLDPLLSALRLDSTRLKCTSIAVSRKWLALGSSGGGLNLIQKEGWKHRLFLSHREGAISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPERIYVSSEHKGQKVTALCWDTAILRVFIGDHXGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVHFVSRSEPQYDHTVGSSQSLSFPKLLHLRCHTRYGKFRLTNVSEHCVLTWTERGIYIFLPQNVQVLLWSEVKDIQDVAVWKNELFCLHLNGKVSHLSLLSVERCVERLLRRGLWNLAAQTCCLFQNSVIASRGRKTLTIDKLEHLKSQLDLTTYGDLISQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIINSRRGSQSDEDSCSLHSQTLSEDERLKEFTSHQEEDQPDQCCGSHGNEDNVSHASVMFETDKNETFLPFGIPLSFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVKPEPRGDEQSCEEDVGPVTCPKEEDTETKLQDPLVLFEPQSLRMVLQEWLSQLEKTFAMKDFSGISDTGNSSMESNQGMLLLDESKKGILDEEDEKERRDSSGNEETVDQAACESVNSLRESLDDDIFQVCSPCSIADSLQKDLAEMTTLCLELNVLNSEIKSASRHVDHTLQQCSPEILACQFLKKYFFLLDLKRAKESIKLSYTNSPCVWDTFIEGLKDVMFPVIDVDFKQTFHSLPKMEEGDLPTRLKLLDDLVPFDSPLLIAYATRLYEKFGESALRSLIRFYPSILPSDVMQLCHHHPAQFLAYLDSLVKSRPEDQRPFFLESLLQPESLRLDWLLLAVSHDAPPSTSTMDDEGDPRPHSHLFSWGYSQLILHLIKLPADFTTKEKVTDICRSHGLDPRDCGGMEASPTSGTEQEHKASPPEVTKWELQRWAFPYQCGECGTPVS*