Part of scaffold_105 (Scaffold)

For more information consult the page for scaffold_105 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

GTF2H1 ENSTTRG00000013755 (Bottlenosed dolphin)

Gene Details

general transcription factor IIH, polypeptide 1, 62kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013047, Bottlenosed dolphin)

Protein Percentage 99.82%
cDNA percentage 99.03%
Ka/Ks Ratio 0.03376 (Ka = 0.0009, Ks = 0.0277)

GTF2H1 ENSBTAG00000005160 (Cow)

Gene Details

general transcription factor IIH subunit 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006803, Cow)

Protein Percentage 98.66%
cDNA percentage 96.3%
Ka/Ks Ratio 0.05381 (Ka = 0.0071, Ks = 0.1327)

GTF2H1  (Minke Whale)

Gene Details

general transcription factor IIH, polypeptide 1, 62kDa

External Links

Gene match (Identifier: BACU005610, Minke Whale)

Protein Percentage 99.82%
cDNA percentage 99.58%
Ka/Ks Ratio 0.04337 (Ka = 0.0008, Ks = 0.0176)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1671 bp    Location:1373938..1406442   Strand:+
>bmy_03619
ATGGCAACTTCATCTGAAGAAGTTTTGCTGATTGTAAAGAAGGTGCGACAAAAGAAGCAGGATGGAGCTCTGTACCTCATGGCAGAAAGAATTGCTTGGGCACCTGAAGGCAAAGATAGATTTACCATCAGCCATATGTATGCAGATATTAAATGCCAGAAAATCAGTCCAGAAGGAAAAGCTAAAATTCAACTTCAGCTGGTCCTGCACGCAGGGGACACAACTAACTTCCATTTTTCCAATGAAAGCACAGCAGTGAAAGAGCGAGATGCAGTGAAAGACCTTCTTCAGCAGTTGCTGCCCAAATTCAAGAGGAAAGCAAATAAAGAACTGGAAGAGAAAAACAGAATGCTGCAAGAAGACCCTGTTTTGTTTCAGCTTTATAAAGACCTTGTTGTGAGTCAAGTGATCAGTGCTGAGGAATTCTGGGCCAATCGTTTAAATGTGAATGCAACAGAGAGTTCTTCCACATCTAATCATAAGCAGGATGTTGGCATTTCTGCAGCATTTCTGGCTGATGTCCGGCCCCAAACAGATGGATGTAATGGTCTGAGATACAATTTAACAACTGATATCATTGAGTCCATATTTAGGACCTATCCAGCAGTAAAAATGAAATATGCGGAAAACGTTCCCCACAACATGACAGAAAAGGAATTCTGGACACGTTTCTTTCAGTCCCATTATTTTCACAGGGACCGGCTGAATACTGGGTCAAAGGACCTCTTTGCAGAATGTGCCAAAATAGATGAAAAAGGGTTAAAAACAATGGTTTCATTAGGAGTGAAAAACCCACTACTTGATTTGACAGCTTTGGAAGATAAACCATTAGATGAGGGCTATGGCATTTCCTCTGTGCCATCTACTTCTAATTCTAAATCCATAAGAGAGAATAGTAATGCTGCCATCATCAAGAGATTTAACCATCACAGTGCCATGGTCCTGGCAGCAGGTCTCAGGAAACAGTTAAGTACACATGCTAAGATGCAAGAAGCACAAAATGAGCAAAATGGCGAGCCCAGCAGCATTGATGGAAATTCTGGAGATGTAGATTGCTTTCAGCCAGCAGTGAAAAGGGCGAAGTTACAAGAGTCCATTGAATATGAAGACTTGGGAAAAAATAATTCCATAAAAACAATTGCACTAAACCTCAAGAAGTCAGATAGGTATTATCATGGTCCAACTCCAATCCAGTCACTACAGTATGCAACAAGTCAGGACATTATTAATTCTTTTCAAAGTATTAGACAAGAAATGGAAGCTTATACACCCAAATTAACTCAGGTTCTCTCAAGCAGTGCTGCCAGTAGTACCATCACAGCACTGTCACCTGGAGGAGCACTGATGCAGGGAGGGACACAGCAAGCCATAAACCAGATGGTGCCAAATGATATTCAGTCTGAATTGAAACACCTGTATGTGGCTGTTGGGGAACTTCTACGGCACTTCTGGTCCTGCTTTCCTGTTAATACGCCATTCCTAGAAGAAAAGGTAGTGAAAATGAAAAGTAATTTGGAACGATTCCAAGTTACAAAACTCTGCCCATTCCAAGAAAAAATTCGGAGACAGTATTTAAGCACAAATTTGGTAAGTCACATAGAGGAGATGCTCCAGACAGCTTACAACAAGCTCCACACGTGGCAGTCACGGCGTCTGATGAAGAAAACGTGA

Related Sequences

bmy_03619T0 Protein

Length: 557 aa      View alignments
>bmy_03619T0
MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNATESSSTSNHKQDVGISAAFLADVRPQTDGCNGLRYNLTTDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSKDLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSTSNSKSIRENSNAAIIKRFNHHSAMVLAAGLRKQLSTHAKMQEAQNEQNGEPSSIDGNSGDVDCFQPAVKRAKLQESIEYEDLGKNNSIKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQVLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFPVNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQSRRLMKKT*