Part of scaffold_109 (Scaffold)

For more information consult the page for scaffold_109 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SELP ENSTTRG00000004061 (Bottlenosed dolphin)

Gene Details

selectin P (granule membrane protein 140kDa, antigen CD62)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003824, Bottlenosed dolphin)

Protein Percentage 92.67%
cDNA percentage 94.53%
Ka/Ks Ratio 0.52547 (Ka = 0.0456, Ks = 0.0868)

SELP ENSBTAG00000020755 (Cow)

Gene Details

P-selectin precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000044117, Cow)

Protein Percentage 84.11%
cDNA percentage 87.5%
Ka/Ks Ratio 0.34833 (Ka = 0.0938, Ks = 0.2693)

SELP  (Minke Whale)

Gene Details

selectin P (granule membrane protein 140kDa, antigen CD62)

External Links

Gene match (Identifier: BACU004257, Minke Whale)

Protein Percentage 93.88%
cDNA percentage 95.31%
Ka/Ks Ratio 0.5498 (Ka = 0.0394, Ks = 0.0717)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2376 bp    Location:909174..938532   Strand:+
>bmy_03695
ATGGATACTAAAAGGAAGTTTTCTTTTCTTATTACAGGCCAGCTGCCTAAAAGCCATCTGGAACTGGAGATTTCAGAGAGTGGTCTTCAGAACCACCCAACTCTTTTGCTTCAGTGCCCTGATCTCTGGGGTGCTAACCTGACCCACACTTTCCTTTACTTAGAGCTAATTAACCAGAAAGAAGTGGCAGCGTGGACCTATCACTACAGCAACAAATCATATTCATGGAATTATTCCCGGGCATTCTGCCAGAAGTACTACACAGATTTAGTAGCTATCCAGAATAAAAATGAGATTGCTTACCTCAATGAGGCCATACCTTACTACAGTTCTTACTACTGGATTGGGATCCGAAAGATCAACAACCAGTGGACCTGGGTGGGAACCAGAAAGACTCTCACCGAGGAGGCTGAGAACTGGGCTGACAACGAGCCCAACAACAAGAAGAACAATCAGGACTGCGTGGAGATCTACATCAAGAGTTTGTCAGCCCCTGGCAAGTGGAATGACGAGCCCTGTGGGAAGAAAAAGCGGGCGCTGTGCTATACAGCCTCCTGCCAGGATATGTCCTGCAGCAAGCAAGGAGAGTGCATTGAGACCATCGGAAACTACACCTGCTCCTGTTACCCTGGATTCTATGGACCAGAATGTGAATATGTCACAGAGTGTAGCGAATTTGACCTCCCTCAACACGTGCTCATGAACTGCAGTCACCCTCTGGGAAACTTCCCTTTCAACACAGAGTGCAGCTTCCACTGCGCTGAAGGGTACACACTGAATGGACCCAGCAAGCTGGAATGTTTGGCTTCTGGAATCTGGACGAATACACCTCCGCAGTGTGTAGCTGTCCAGTGCCCACCCCTGAGGTCTCCTGAGCAAGGAAGCATGACCTGTTTCCACTCTGCAAAAGCATTCCAGCACCAGTCCAGCTGCAGCTTCAGTTGCGAAGAGGGATTTGCATTAGTTGGGCCAGAGGTGGTGCAGTGCACAGCCTCGGGGGTGTGGACAGCCCCAGCTCCAGTGTGTAAAGCCATTGCCTGTGAGCCTCTGGAGAGTCCTGTGCATGGAAGCATGGATTGCTCCCTGTCTTCGAGAGCATTTCAGTACAACACCAACTGTAGCTTTCATTGTGCTGAGGGTTTCACACTGAGAGGAGCTGGCACAGTTCGATGTGCTGATTTGGGACAGTGGACGGCGCCAGCCCCAGTCTGTCAAGCGTTGCAGTGCCAGTATCTTCCAGCCTCAAACAAGGCCCAGGTGAACTGCTCCCATCCCTTTGGTGCCTTTAGGTACCAGTCGACCTGCAGCTTCACCTGTGATGAGGGCTYGCTCCTGGTGGGAGCAAGTGTGCTGCAGTGCTTGGACACGGGAAACTGGAATGCTCCTTTTCCAGAATGCCAAGCCGTTACCTGCGCACCTCTCCCAAACCCGAAGAATGGAACAAAGACCTGTGTCCAGCCTCTTGGAGGTTCCAGTTATAAGGCCATATGCCAGTTCACCTGTGATGAGGGATTCTCTTTATCTGGACCGGAAAGATTGGACTGTACTCCATCTGGACACTGGACAGATTCCCCACCAACGTGTGACGCCATCAAGTGTCCAGAACTATCTGCCCCAGAGCAGGGAAGCCTGGATTGTCCTGACACTCATGGAGAATTCACTGCTGGCTCCACCTGCCATTTCTCCTGTAACGAGGGCTTTAAGCTGGAGGGGTCCAACCATGTTGAATGCACAGCTTCTGGAAGATGGACAGCACCCCGACCGACGTGTGATGACATAGTATCAGCTCCTACTGTAGAGGTGCAATGCCCATCCCTCRTCACTCCAAAGCAAGGAACAATGTCCTGTCAGCATCATCTGGGAACCTTTGGTTTGAATACCACTTGCCACTTTGGATGCAAAGCTGGATTCACACTCATGGGAGACAGTGCTCTCCGATGCAGACCTTCTGGACAATGGACAGCAGTAGCTCCAGCATGCAGAGCTGTCACATGTTCCAAGCTACACGTTACTGAGCCAATAGTGATGAACTGCTCCAACCCTTGGGGAAATTTCAGCTATGGATCAACCTGCAGCTTCCATTGCCCAGAGGGTCGTTTACTTAGTGGCTCAGCGAGAACAGTGTGCCAAGAGAATGGCCAGTGGTCAGCTGTCATGCCAGCGTGCCAAGCGGGGCCATTGACTATCCAGGAAGCCTTGACTTATTTTGGTGGAGCAGTGGCTTCTACAACAGGTTTAGTGACGGGTGGGCTACTCCTGGCTCTGCTAAGAAAGCGTTGCAGACAAAAAGATGAAGGAAAAAGCCCCTTGAACCCTCAAAGCCACCTAGGAACATACGGAGTTTTTACAAATGCTGCATTTGACCCAAGCCCTTAA

Related Sequences

bmy_03695T0 Protein

Length: 792 aa      View alignments
>bmy_03695T0
MDTKRKFSFLITGQLPKSHLELEISESGLQNHPTLLLQCPDLWGANLTHTFLYLELINQKEVAAWTYHYSNKSYSWNYSRAFCQKYYTDLVAIQNKNEIAYLNEAIPYYSSYYWIGIRKINNQWTWVGTRKTLTEEAENWADNEPNNKKNNQDCVEIYIKSLSAPGKWNDEPCGKKKRALCYTASCQDMSCSKQGECIETIGNYTCSCYPGFYGPECEYVTECSEFDLPQHVLMNCSHPLGNFPFNTECSFHCAEGYTLNGPSKLECLASGIWTNTPPQCVAVQCPPLRSPEQGSMTCFHSAKAFQHQSSCSFSCEEGFALVGPEVVQCTASGVWTAPAPVCKAIACEPLESPVHGSMDCSLSSRAFQYNTNCSFHCAEGFTLRGAGTVRCADLGQWTAPAPVCQALQCQYLPASNKAQVNCSHPFGAFRYQSTCSFTCDEGXLLVGASVLQCLDTGNWNAPFPECQAVTCAPLPNPKNGTKTCVQPLGGSSYKAICQFTCDEGFSLSGPERLDCTPSGHWTDSPPTCDAIKCPELSAPEQGSLDCPDTHGEFTAGSTCHFSCNEGFKLEGSNHVECTASGRWTAPRPTCDDIVSAPTVEVQCPSLXTPKQGTMSCQHHLGTFGLNTTCHFGCKAGFTLMGDSALRCRPSGQWTAVAPACRAVTCSKLHVTEPIVMNCSNPWGNFSYGSTCSFHCPEGRLLSGSARTVCQENGQWSAVMPACQAGPLTIQEALTYFGGAVASTTGLVTGGLLLALLRKRCRQKDEGKSPLNPQSHLGTYGVFTNAAFDPSP*