Part of scaffold_114 (Scaffold)

For more information consult the page for scaffold_114 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PSMD6 ENSTTRG00000013621 (Bottlenosed dolphin)

Gene Details

proteasome (prosome, macropain) 26S subunit, non-ATPase, 6

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012923, Bottlenosed dolphin)

Protein Percentage 77.5%
cDNA percentage 81.81%
Ka/Ks Ratio 0.58179 (Ka = 0.187, Ks = 0.3215)

BT.88479 ENSBTAG00000015112 (Cow)

Gene Details

26S proteasome non-ATPase regulatory subunit 6

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020108, Cow)

Protein Percentage 77.08%
cDNA percentage 77.78%
Ka/Ks Ratio 0.27233 (Ka = 0.1838, Ks = 0.6748)

PSMD6  (Minke Whale)

Gene Details

proteasome (prosome, macropain) 26S subunit, non-ATPase, 6

External Links

Gene match (Identifier: BACU015101, Minke Whale)

Protein Percentage 80.83%
cDNA percentage 83.47%
Ka/Ks Ratio 0.49361 (Ka = 0.1578, Ks = 0.3197)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 723 bp    Location:78070..82475   Strand:+
>bmy_03776
ATGACCTCGCAGTTGTGTACGAGGAAGGAGTGGGTAGACACTGAGGTTAGGGCAGGACGGGGCCTCACTCCTAAGTCACATCCCTCTTGTTCGCTCTCAGACATGGCTCCTTATTACGAAGCCTTGTGCAAATCCCTTGACTGGCAGATGGACGTGGACCTGCTCAGTAAAATGAAGAAGGCAAATGAAGACGAGTTGAAACGTTTGGACGAGGAGCTGGAAGATGCGGAGAAGAATCTGGGAGAGAGCGAAATCCGAGACGCGATGATGGCAAAGGCCGAGTACCTCTGCCGGATAGGTGACAAGGTTAGTGAGATGGTCTCCCCTCTCTATAAGAAATTGATCTTGATAGAGGAAGGAGGAGACTGGGACCGGAGAAACCGCCTAAAAGTATATCAGGGTCTTTATTGTGTGGCTATTCGTGATTTCAAACAGGCAGCTGAACTCTTCCTTGACACAGTTTCAACGTTTACATCCTATGAACTCATGGATTATAAAACCTTTGTGACTTACACTGTCTATGTCAGCATGATTGCTTTAGAAAGACCAGATCTCAGGGAAAAGGTTATTAAAGGAGCAGAGATTCTGGAAGTGTTGCACAGTCTTCCAGCAGTTCGGCAGTATCTGTTTTCACTCTATGAATGCCGTTACTCGGTTTTCTTCCAATCATTAGGTAAGGATAGAGTTGCTCGTTTTGACTGTCTGTCTTCATCTTATTCCTGA

Related Sequences

bmy_03776T0 Protein

Length: 241 aa      View alignments
>bmy_03776T0
MTSQLCTRKEWVDTEVRAGRGLTPKSHPSCSLSDMAPYYEALCKSLDWQMDVDLLSKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKVSEMVSPLYKKLILIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLGKDRVARFDCLSSSYS*