Sequence details bmy_03800 (Coding sequence)

Part of scaffold_116 (Scaffold)

For more information consult the page for scaffold_116 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CCL20 ENSTTRG00000013106 (Bottlenosed dolphin)

Gene Details

chemokine (C-C motif) ligand 20

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012435, Bottlenosed dolphin)

Protein Percentage 90.48%
cDNA percentage 94.05%
Ka/Ks Ratio 0.79395 (Ka = 0.059, Ks = 0.0743)

CCL20 ENSBTAG00000021326 (Cow)

Gene Details

C-C motif chemokine 20

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000028430, Cow)

Protein Percentage 79.52%
cDNA percentage 85.14%
Ka/Ks Ratio 0.3753 (Ka = 0.1243, Ks = 0.3313)

Additional orthologs identified in other species via the OPTIC pipeline.

CCL20 (Human)   Ccl20 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 309 bp    Location:1569903..1573021   Strand:+
Raw sequence 
>bmy_03800
ATGTCAGTGTTGCTACTCCACCTCTGCAGCAAGTCAGAAGCAGCAAGCAACTTTGACTGCTGCCTCCAATATACAGAAAAAATCCTTCATCCCAAATTTATCGTGGGCTTCACACAGCAGCTGGCCAATGAAGCTTGTGACATCAATGCAGTCATCTTATACACAAGGAGAAGATTAGCTGTGTGTGCAGATCCAAAGAAGAATTGGGTGAAACAAGCAGTGCATATCCTCAGGAACCCTGATTTCCTCATATGGCTTCTGAGCTGCTTGTCAAAGAGTCAAGAAGATGTAAAAATGGATACTCCCTGA

Related Sequences

bmy_03800T0 Protein

Length: 103 aa      View alignments
>bmy_03800T0
MSVLLLHLCSKSEAASNFDCCLQYTEKILHPKFIVGFTQQLANEACDINAVILYTRRRLAVCADPKKNWVKQAVHILRNPDFLIWLLSCLSKSQEDVKMDTP*