Part of scaffold_112 (Scaffold)

For more information consult the page for scaffold_112 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

GEN1 ENSTTRG00000015915 (Bottlenosed dolphin)

Gene Details

GEN1 Holliday junction 5' flap endonuclease

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015081, Bottlenosed dolphin)

Protein Percentage 91.72%
cDNA percentage 93.71%
Ka/Ks Ratio 0.50099 (Ka = 0.0235, Ks = 0.0469)

GEN1 ENSBTAG00000020059 (Cow)

Gene Details

flap endonuclease GEN homolog 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000041132, Cow)

Protein Percentage 85.32%
cDNA percentage 90.47%
Ka/Ks Ratio 0.41528 (Ka = 0.0774, Ks = 0.1864)

GEN1  (Minke Whale)

Gene Details

GEN1 Holliday junction 5' flap endonuclease

External Links

Gene match (Identifier: BACU010267, Minke Whale)

Protein Percentage 97.54%
cDNA percentage 98.36%
Ka/Ks Ratio 0.28204 (Ka = 0.0093, Ks = 0.0329)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2760 bp    Location:15522..46926   Strand:+
>bmy_03836
ATGGGAGTGAATGACTTGTGGCAGATTCTGGAGCCTGTTAAACAACACGTCCACTTGCACAGTCTTGGTGGGAAAACCATTGCGGTTGATCTGAGTCTCTGGGTATGTGAAGCACAGACAGTCAAAAAAATGATTGGGACAGTCATGAAGCCCCACCTCAGGAACCTGTTTTTTCGTATCTCATATTTAACGCTAATGGATGTAAAACTGGTGTTCGTTATGGAAGGGGAACCCCCAAAGCTGAAAGCTGATGTCATAAGTAAGAGGAATCAGATTCGGTATGGAGGTTCGGGAAAAACATGGTCTCAGAAAACAGGGAGATCACATTTTAAATCAGTCTTAAAGGAGTGTCTTGATATGCTGGAATGCTTAGGAATTCCCTGGGTCCAAGCTGCTGGGGAAGCTGAAGCCATGTGTGCTTACCTCAATGCCAGTGGTTATGTAGATGGCTGCCTCACCAATGATGGAGATGCTTTCCTTTAYGGGGCCCAAACTGTTTATAGAAATTTCACTATGAATACCAAGGACCCACATGTTGACTGTTATACAATGTCATCCATCCAGAGTAAACTAGGTTTGGATAGAAATGCTCTGGTTGGGCTAGCAATACTACTTGGCTGTGATTATCTTCCAAAGGGAGTCCCTGGAGTTGGAAAAGAGCAAGCATTAAAACTTATAAAGATTTTGAAAGGGCAAAGTTTACTTCAGAGACTGGGACAGCAACTTCACCGCCAAAGGAAAAATAAGTTTAATCAGTGGAATGAAAAATTTTGTTACTCTAATTCACAACCATCAGTCGTTAGCAAACTGGCTCATTGCTCTGTATGTTCCCATCCAGGTTCACCTAAGGATCATGAACGTAATGGATGCAAATTATGTAAAACTGATCGATATTGTGAGCCACATGATTATGAATACTGTTGTCCTTGTGAGTGGCACCGAACAGAACATGAGAGACAACTAAATGCAGTRGAAAACAGTATTAAGAAAAAAGCTTGCAGTTGTGAGGGATTCCCATTCCACGAGGTTATTGAAGAATTCCTTTTGAACAAGGATAAATTGGTGACGGCAATCAGGTACCAAAGACCTGATTTATTATTGTTTCAGAGATTTACTCTTGAAAAAATGGAGTGGCCCAGTCACTATGCATGTGAGAAATTGTTGACACTGTTGACCCACTATGACATGATAGAAAGAAAGCTCGGTAGAAGGAACTCTAATCAACTACAGCCACTTCGAATTGTTAAAAACCGAATCAGAAATGGAGTTCATTGCTTTGAAATAGAATGGGAAAAGCCTGAACATTATTCTATAGAAGATAAACCTGGAGAATTGGTTTTACAAACAATAGAAGAAGAATCATTGTTTGAAGCAGCTTATCCTGAGATTGTTGCTGTTTACCAAAAACAAAAGTCAGAAATTAAAGGCAAGAAACAAAAAAGCATGAAAACTAAGTCTAAAGGAAACAATTTGCCAGAATCAGATGATATGATGACTTTTCAATCACACATGACTTTAAAACCCACATGTGAAATCTTTTCTAAGCAGAATTCCARGTTAAATTGGGAAATTTCCCCTGATTCTACATTACCCCAGGAATCTATTTCTGTGTCATTGAATACCTTGCTTTTACCTGAAGATGCTCCCTGTTTGAATACACAAGAACAGTTAATATCTTCTCCAAGACCTTTGGCTGTGCAGCAAATTAAAGCTGTCAGTAAGTCTCTGATTGCAGAATCTAGTCAACCCAGTACCTCATCCCATAATATATCTGCAATTGCTGATCTGCACTTGAGCACCATTGACTGGGAAGGTACTTCTTTCAGTAATTCTCCAGCTATCCCAAGGAACACTTTTGCTCATGGTGTAAAATCGGAACTTGAAACAGCTATCCCTGATAGCTTTAAAAATATTACAGAGCAATTGTCATGTGAATCAGAATGGTGCACTACAAACATTAATAAACTCTTCGATTGGGATCTTCAAAAGACTGATCCTGAAGAGCACCTACTTTCTGGCATTACTGATTTACATCTTCAGGATTTACCTTTAAAGGAACGAATACATATAAAATCATCATATCCTCAGAATAATGTACAACCAGATGATRTGAAAACATTGTCCCTACTTACTGTACAAGAACACTGTATTGCTAATAGTAGTTCTGAATGTCTRTCACATCTTTCAAAGGATCTTCTAGGAATTCATTTGCAAAATGAATCTAGAAACTGTAAAGTCCTAAAAGGAAACCAGCTGTTTCAAGAAAACTATAAAGCAAATACTTCTATACCTTATTCTGTCAATAACCCAATAGCAAAGACCTCCAGTGTTAGAAATGGACCACCAAATACTGCTTTAGATTATAGTAGAAAAGGTGATGTGCAAACCACCCGGAAAACTGTAATGAAGAAGAGTGTTTGCCTTGACACACATTCCTCTGGTGAAGAAATTATCCCAGAGTCTGGGAAAGCTAAGTCCACAACTCAAAAAATGAAGCAGAGTTCTCAGAAACATAGCCCAGCCCAGTTCAAAAAAAAKGATGCCAACAAATTGAGTAACCCTAAAGCACATATTAAAGAAACTGAACAGTGTGTCCAGCCTTATAAAACAGCTGGAAATGAAGAAACCTGTTTCCAAGATGCAGCAAAAGGGTCTCTGAGTTTTCTACAGTGTCGTAAGGAAAAAGACGCCTCTGGTACCTGTTTGGATAGTCCTCTTCCTTTAAGTCAGAGATTAAAACTAAGGTTCCAAAACACCTGA

Related Sequences

bmy_03836T0 Protein

Length: 920 aa      View alignments
>bmy_03836T0
MGVNDLWQILEPVKQHVHLHSLGGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRISYLTLMDVKLVFVMEGEPPKLKADVISKRNQIRYGGSGKTWSQKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPHVDCYTMSSIQSKLGLDRNALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQSLLQRLGQQLHRQRKNKFNQWNEKFCYSNSQPSVVSKLAHCSVCSHPGSPKDHERNGCKLCKTDRYCEPHDYEYCCPCEWHRTEHERQLNAVENSIKKKACSCEGFPFHEVIEEFLLNKDKLVTAIRYQRPDLLLFQRFTLEKMEWPSHYACEKLLTLLTHYDMIERKLGRRNSNQLQPLRIVKNRIRNGVHCFEIEWEKPEHYSIEDKPGELVLQTIEEESLFEAAYPEIVAVYQKQKSEIKGKKQKSMKTKSKGNNLPESDDMMTFQSHMTLKPTCEIFSKQNSXLNWEISPDSTLPQESISVSLNTLLLPEDAPCLNTQEQLISSPRPLAVQQIKAVSKSLIAESSQPSTSSHNISAIADLHLSTIDWEGTSFSNSPAIPRNTFAHGVKSELETAIPDSFKNITEQLSCESEWCTTNINKLFDWDLQKTDPEEHLLSGITDLHLQDLPLKERIHIKSSYPQNNVQPDDXKTLSLLTVQEHCIANSSSECLSHLSKDLLGIHLQNESRNCKVLKGNQLFQENYKANTSIPYSVNNPIAKTSSVRNGPPNTALDYSRKGDVQTTRKTVMKKSVCLDTHSSGEEIIPESGKAKSTTQKMKQSSQKHSPAQFKKXDANKLSNPKAHIKETEQCVQPYKTAGNEETCFQDAAKGSLSFLQCRKEKDASGTCLDSPLPLSQRLKLRFQNT*