Sequence detailsbmy_03836 (Coding sequence)

Part of scaffold_112 (SequenceType object (1))

For more information consult the page for scaffold_112 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

GEN1ENSTTRG00000015915 (Bottlenosed dolphin)

Gene Details

GEN1 Holliday junction 5' flap endonuclease

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000015081, Bottlenosed dolphin)

Protein Percentage 91.72%
cDNA percentage 93.71%
Ka/Ks Ratio 0.50099 (Ka = 0.0235, Ks = 0.0469)

GEN1ENSBTAG00000020059 (Cow)

Gene Details

flap endonuclease GEN homolog 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000041132, Cow)

Protein Percentage 85.32%
cDNA percentage 90.47%
Ka/Ks Ratio 0.41528 (Ka = 0.0774, Ks = 0.1864)

GEN1 (Minke Whale)

Gene Details

GEN1 Holliday junction 5' flap endonuclease

External Links

Gene match (Identifier: BACU010267, Minke Whale)

Protein Percentage 97.54%
cDNA percentage 98.36%
Ka/Ks Ratio 0.28204 (Ka = 0.0093, Ks = 0.0329)

Additional orthologs identified in other species via the OPTIC pipeline.

GEN1 (Human)   Gen1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2760 bp    Location:15522..46926   Strand:+
Raw sequence 
>bmy_03836
ATGGGAGTGAATGACTTGTGGCAGATTCTGGAGCCTGTTAAACAACACGTCCACTTGCACAGTCTTGGTGGGAAAACCATTGCGGTTGATCTGAGTCTCTGGGTATGTGAAGCACAGACAGTCAAAAAAATGATTGGGACAGTCATGAAGCCCCACCTCAGGAACCTGTTTTTTCGTATCTCATATTTAACGCTAATGGATGTAAAACTGGTGTTCGTTATGGAAGGGGAACCCCCAAAGCTGAAAGCTGATGTCATAAGTAAGAGGAATCAGATTCGGTATGGAGGTTCGGGAAAAACATGGTCTCAGAAAACAGGGAGATCACATTTTAAATCAGTCTTAAAGGAGTGTCTTGATATGCTGGAATGCTTAGGAATTCCCTGGGTCCAAGCTGCTGGGGAAGCTGAAGCCATGTGTGCTTACCTCAATGCCAGTGGTTATGTAGATGGCTGCCTCACCAATGATGGAGATGCTTTCCTTTAYGGGGCCCAAACTGTTTATAGAAATTTCACTATGAATACCAAGGACCCACATGTTGACTGTTATACAATGTCATCCATCCAGAGTAAACTAGGTTTGGATAGAAATGCTCTGGTTGGGCTAGCAATACTACTTGGCTGTGATTATCTTCCAAAGGGAGTCCCTGGAGTTGGAAAAGAGCAAGCATTAAAACTTATAAAGATTTTGAAAGGGCAAAGTTTACTTCAGAGACTGGGACAGCAACTTCACCGCCAAAGGAAAAATAAGTTTAATCAGTGGAATGAAAAATTTTGTTACTCTAATTCACAACCATCAGTCGTTAGCAAACTGGCTCATTGCTCTGTATGTTCCCATCCAGGTTCACCTAAGGATCATGAACGTAATGGATGCAAATTATGTAAAACTGATCGATATTGTGAGCCACATGATTATGAATACTGTTGTCCTTGTGAGTGGCACCGAACAGAACATGAGAGACAACTAAATGCAGTRGAAAACAGTATTAAGAAAAAAGCTTGCAGTTGTGAGGGATTCCCATTCCACGAGGTTATTGAAGAATTCCTTTTGAACAAGGATAAATTGGTGACGGCAATCAGGTACCAAAGACCTGATTTATTATTGTTTCAGAGATTTACTCTTGAAAAAATGGAGTGGCCCAGTCACTATGCATGTGAGAAATTGTTGACACTGTTGACCCACTATGACATGATAGAAAGAAAGCTCGGTAGAAGGAACTCTAATCAACTACAGCCACTTCGAATTGTTAAAAACCGAATCAGAAATGGAGTTCATTGCTTTGAAATAGAATGGGAAAAGCCTGAACATTATTCTATAGAAGATAAACCTGGAGAATTGGTTTTACAAACAATAGAAGAAGAATCATTGTTTGAAGCAGCTTATCCTGAGATTGTTGCTGTTTACCAAAAACAAAAGTCAGAAATTAAAGGCAAGAAACAAAAAAGCATGAAAACTAAGTCTAAAGGAAACAATTTGCCAGAATCAGATGATATGATGACTTTTCAATCACACATGACTTTAAAACCCACATGTGAAATCTTTTCTAAGCAGAATTCCARGTTAAATTGGGAAATTTCCCCTGATTCTACATTACCCCAGGAATCTATTTCTGTGTCATTGAATACCTTGCTTTTACCTGAAGATGCTCCCTGTTTGAATACACAAGAACAGTTAATATCTTCTCCAAGACCTTTGGCTGTGCAGCAAATTAAAGCTGTCAGTAAGTCTCTGATTGCAGAATCTAGTCAACCCAGTACCTCATCCCATAATATATCTGCAATTGCTGATCTGCACTTGAGCACCATTGACTGGGAAGGTACTTCTTTCAGTAATTCTCCAGCTATCCCAAGGAACACTTTTGCTCATGGTGTAAAATCGGAACTTGAAACAGCTATCCCTGATAGCTTTAAAAATATTACAGAGCAATTGTCATGTGAATCAGAATGGTGCACTACAAACATTAATAAACTCTTCGATTGGGATCTTCAAAAGACTGATCCTGAAGAGCACCTACTTTCTGGCATTACTGATTTACATCTTCAGGATTTACCTTTAAAGGAACGAATACATATAAAATCATCATATCCTCAGAATAATGTACAACCAGATGATRTGAAAACATTGTCCCTACTTACTGTACAAGAACACTGTATTGCTAATAGTAGTTCTGAATGTCTRTCACATCTTTCAAAGGATCTTCTAGGAATTCATTTGCAAAATGAATCTAGAAACTGTAAAGTCCTAAAAGGAAACCAGCTGTTTCAAGAAAACTATAAAGCAAATACTTCTATACCTTATTCTGTCAATAACCCAATAGCAAAGACCTCCAGTGTTAGAAATGGACCACCAAATACTGCTTTAGATTATAGTAGAAAAGGTGATGTGCAAACCACCCGGAAAACTGTAATGAAGAAGAGTGTTTGCCTTGACACACATTCCTCTGGTGAAGAAATTATCCCAGAGTCTGGGAAAGCTAAGTCCACAACTCAAAAAATGAAGCAGAGTTCTCAGAAACATAGCCCAGCCCAGTTCAAAAAAAAKGATGCCAACAAATTGAGTAACCCTAAAGCACATATTAAAGAAACTGAACAGTGTGTCCAGCCTTATAAAACAGCTGGAAATGAAGAAACCTGTTTCCAAGATGCAGCAAAAGGGTCTCTGAGTTTTCTACAGTGTCGTAAGGAAAAAGACGCCTCTGGTACCTGTTTGGATAGTCCTCTTCCTTTAAGTCAGAGATTAAAACTAAGGTTCCAAAACACCTGA

Related Sequences

bmy_03836T0 SequenceType object (3)

Length: 920 aa      View alignments
>bmy_03836T0
MGVNDLWQILEPVKQHVHLHSLGGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRISYLTLMDVKLVFVMEGEPPKLKADVISKRNQIRYGGSGKTWSQKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPHVDCYTMSSIQSKLGLDRNALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQSLLQRLGQQLHRQRKNKFNQWNEKFCYSNSQPSVVSKLAHCSVCSHPGSPKDHERNGCKLCKTDRYCEPHDYEYCCPCEWHRTEHERQLNAVENSIKKKACSCEGFPFHEVIEEFLLNKDKLVTAIRYQRPDLLLFQRFTLEKMEWPSHYACEKLLTLLTHYDMIERKLGRRNSNQLQPLRIVKNRIRNGVHCFEIEWEKPEHYSIEDKPGELVLQTIEEESLFEAAYPEIVAVYQKQKSEIKGKKQKSMKTKSKGNNLPESDDMMTFQSHMTLKPTCEIFSKQNSXLNWEISPDSTLPQESISVSLNTLLLPEDAPCLNTQEQLISSPRPLAVQQIKAVSKSLIAESSQPSTSSHNISAIADLHLSTIDWEGTSFSNSPAIPRNTFAHGVKSELETAIPDSFKNITEQLSCESEWCTTNINKLFDWDLQKTDPEEHLLSGITDLHLQDLPLKERIHIKSSYPQNNVQPDDXKTLSLLTVQEHCIANSSSECLSHLSKDLLGIHLQNESRNCKVLKGNQLFQENYKANTSIPYSVNNPIAKTSSVRNGPPNTALDYSRKGDVQTTRKTVMKKSVCLDTHSSGEEIIPESGKAKSTTQKMKQSSQKHSPAQFKKXDANKLSNPKAHIKETEQCVQPYKTAGNEETCFQDAAKGSLSFLQCRKEKDASGTCLDSPLPLSQRLKLRFQNT*