Part of scaffold_112 (Scaffold)

For more information consult the page for scaffold_112 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LAPTM4A ENSTTRG00000017108 (Bottlenosed dolphin)

Gene Details

lysosomal protein transmembrane 4 alpha

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016217, Bottlenosed dolphin)

Protein Percentage 100.0%
cDNA percentage 99.0%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0358)

LAPTM4A ENSBTAG00000020894 (Cow)

Gene Details

Lysosomal-associated transmembrane protein 4A

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027837, Cow)

Protein Percentage 100.0%
cDNA percentage 96.85%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.1191)

LAPTM4A  (Minke Whale)

Gene Details

lysosomal protein transmembrane 4 alpha

External Links

Gene match (Identifier: BACU010258, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.67%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0099)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 606 bp    Location:1937924..1919003   Strand:-
>bmy_03846
ATGGTGTCCATGACTTTCAAGCGGAGCCGCAGCGACCGGTTCTACAGCACCCGGTGCTGCGGCTGTTGCCATGTCCGCACCGGGACAATCATCCTGGGGACCTGGTACATGGTGGTCAACCTGTTGATGGCAATTTTGCTGACTGTGGAAGTAACACATCCAAACTCAATGCCAGCTGTCAACATTCAGTATGAAGTCATTGGCAATTACTATTCGTCCGAGAGAATGGCTGATAATGCCTGTGTTCTTTTTGCCGTCTCTGTTCTTATGTTTATCATCAGTTCAATGCTGGTATACGGAGCAATTTCTTATCAAGTGGGTTGGCTGATTCCGTTCTTCTGCTACCGGCTTTTTGACTTCGTTCTCAGCTGCCTGGTTGCTATCAGTTCTCTCACTTACTTGCCAAGAATCAAAGAGTATCTGGATCAGTTAGCTTATCTAATCAACTGTGTTTGGAACTGTTATAAATACATCAACAACAGAAACATGCCAGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCACAGTATGTTTTGCCAACCTATGAAATGGCAGTGAAGATGCCCGAGAAGGAACCACCACCTCCTTACATACCTGCCTGA

Related Sequences

bmy_03846T0 Protein

Length: 202 aa      View alignments
>bmy_03846T0
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLAYLINCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA*