Part of scaffold_120 (Scaffold)

For more information consult the page for scaffold_120 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

FOXA1 ENSTTRG00000002855 (Bottlenosed dolphin)

Gene Details

forkhead box A1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002678, Bottlenosed dolphin)

Protein Percentage 99.32%
cDNA percentage 98.34%
Ka/Ks Ratio 0.04243 (Ka = 0.0037, Ks = 0.0867)

BT.88447 ENSBTAG00000013888 (Cow)

Gene Details

hepatocyte nuclear factor 3-alpha

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053401, Cow)

Protein Percentage 96.77%
cDNA percentage 94.05%
Ka/Ks Ratio 0.03615 (Ka = 0.0134, Ks = 0.3699)

FOXA1  (Minke Whale)

Gene Details

forkhead box A1

External Links

Gene match (Identifier: BACU007375, Minke Whale)

Protein Percentage 95.27%
cDNA percentage 95.91%
Ka/Ks Ratio 0.34085 (Ka = 0.0324, Ks = 0.0951)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1398 bp    Location:1365697..1361998   Strand:-
>bmy_03855
ATGTTAGGGGCTGTGAAGATGGAAGGGCACGAGAGCAGCGACTGGAACAGCTACTACGCCGACACACAGGAGGCCTACTCCTCGGTCCCAGTCAGCAACATGAACTCGGGCCTGGGCACCATGAATTCCATGAACACGTACATGACCATGAACACCATGACCACGAGCGGCAACATGACCCCGGCTTCGTTCAACATGTCCTACGCAAACCCGGGCCTTGGCGCCGGCCTGAGCCCCGGGGCGGTGGCTGGCATGCCGGGCGGCTCTGCGGGCGCCATGAATACCATGACGGCGGGCGTGACGGCCATGGGGACGACGCTGAGCCCGGGCGGCATGGGGGCCATGGGCGCGCAGCCCGCCGCCTCCATGAACGGCCTAGGCCCCTACGCGGCTGCCATGAACCCGTGCATGAGCCCCATGGCGTACGCGCCGTCCAATTTGGGCCGCAGCCGGGCTGGTGGTGGCGGAGACGCCAAAACTTTCAAGCGCAGCTACCCGCACGCCAAGCCGCCCTACTCGTACATTTCCCTCATCACCATGGCTATCCAGCAGGCGCCCAGCAAGATGCTCACACTGAGCGAGATCTATCAGTGGATCATGGACCTCTTCCCCTATTACCGGCAGAACCAGCAGCGCTGGCAGAACTCCATCCGCCACTCGCTCTCCTTCAACGACTGCTTCGTCAAAGTGGCCCGCTCCCCGGACAAGCCGGGCAAGGGTTCCTACTGGACGCTGCACCCGGACTCCGGCAACATGTTCGAGAACGGCTGTTACTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCAGGGACCGGGGGCGGGAGCGGCGGCGGCGCCAAGGGCGGCCCTGAGAGCCGTAAGGACCCCTCGAGCGCTGCCAACCCCAGCGCCGACTCGCCCCTTCATCGGGGCGTGCACAGTAAGGCCGGCCAGCTAGAGGGCGCGCCGGCCCCCGGGCCCGCTGCCAGCCCCCAGACTCTGGACCACAGCGGGGCGGCGGCGACAGGGGGCGCCTCGGAGTTGAAGACTCCGGCCTCCTCGGCTGCACCTCCGATCAGCTCCGGGCCTGCGGCCCTGGTGTCTGTGCCCCCCTCCCACCCGGCGCATGGCCTGGCACCCCACGAGTCCCAGCTGCACCTGAAAGGGGACCCTCACTACTCCTTCAACCACCCTTTCTCTATCAACAACCTCATGTCCTCCTCGGAGCAGCACAAGCTGGACTTCAAGTCGTACGAGCAGGCGCTACAGTACTCGCCCTATGGCACCGCACTGCCCGCCAGCCTACCCCTCGGCAGCGCCTCGGTGGCCACGAGGAGCCCCATTGAGCCCTCAGCCCTGGAGCCAGCCTACTACCAAGGTGTGTATTCCAGACCCGTTCTAAACACTTCTTAG

Related Sequences

bmy_03855T0 Protein

Length: 466 aa      View alignments
>bmy_03855T0
MLGAVKMEGHESSDWNSYYADTQEAYSSVPVSNMNSGLGTMNSMNTYMTMNTMTTSGNMTPASFNMSYANPGLGAGLSPGAVAGMPGGSAGAMNTMTAGVTAMGTTLSPGGMGAMGAQPAASMNGLGPYAAAMNPCMSPMAYAPSNLGRSRAGGGGDAKTFKRSYPHAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCEKQPGTGGGSGGGAKGGPESRKDPSSAANPSADSPLHRGVHSKAGQLEGAPAPGPAASPQTLDHSGAAATGGASELKTPASSAAPPISSGPAALVSVPPSHPAHGLAPHESQLHLKGDPHYSFNHPFSINNLMSSSEQHKLDFKSYEQALQYSPYGTALPASLPLGSASVATRSPIEPSALEPAYYQGVYSRPVLNTS*