Sequence detailsbmy_03977 (Coding sequence)

Part of scaffold_121 (SequenceType object (1))

For more information consult the page for scaffold_121 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL4A2ENSTTRG00000006268 (Bottlenosed dolphin)

Gene Details

collagen, type IV, alpha 2

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000005937, Bottlenosed dolphin)

Protein Percentage 81.17%
cDNA percentage 82.92%
Ka/Ks Ratio 0.43975 (Ka = 0.0765, Ks = 0.1739)

COL4A2ENSBTAG00000025210 (Cow)

Gene Details

Collagen alpha-2(IV) chain

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000005916, Cow)

Protein Percentage 79.13%
cDNA percentage 79.99%
Ka/Ks Ratio 0.20706 (Ka = 0.1385, Ks = 0.6689)

COL4A2 (Minke Whale)

Gene Details

collagen, type IV, alpha 2

External Links

Gene match (Identifier: BACU017417, Minke Whale)

Protein Percentage 91.23%
cDNA percentage 93.14%
Ka/Ks Ratio 0.48762 (Ka = 0.0565, Ks = 0.1159)

Additional orthologs identified in other species via the OPTIC pipeline.

COL4A2 (Human)   Col4a2 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2568 bp    Location:594902..553315   Strand:-
Raw sequence 
>bmy_03977
ATGGGTGAACCAGGCCCCCCCGGCCCACCAGCCTACTCCCCGTATCCTTCCCTGGCCAAAGGTGCCAGAGGGGACCCAGGATTCCAAGGAGCCCCCGGGGACCCAGGAGCCCGGGGGGAGCCTGGAGACCCCGGCTTTCCAGGCCTGCCTGGCACGTCCATTGGAGATGAAGATGAGAAGAGAGGCTTACCGGGCGAGATGGGACCCAAAGGCTTCACAGGAGAGCAGGGTATCCCCGCCCTGTACCCCGGCCCGCCGGGAGCTGACGGAAAGCCAGGGCTCCGAGGTCCCCCAGGGATCCCGGGACCACCTGGCCCAGACGGTTTCCTTTTCGGCCTTAAAGGAGCAAAAGGCAGGGTGGGCTACCCTGGGCCTTCTGGTTTCCCCGGGGCTCGCGGACAGAAAGGATGGAAAGGCAATGACGGCGACTGTCAATGTGCAGAGGGTGACCAGTTCATCGGGGGTCTTCCGGGGCCACCAGGACCCAAGGGCTTTCCCGGCACCAATGGGGAACCAGGGAGGAAAGGCAGCCCGGGAGACCCCGGCCAGCACGGCATCCCCGGGTTCCCAGGATTCAAGGGAGCCTCTGGTGATGTTGGCCCTCCCGGGCCCAAAGGAATGAAGGGAGATTCTCGAACCATCACCACCAAAGATTGCGATACGGGTATGAAAAGGCCCATCGGAGCAGAGGAACAGGAGACCGTCCGGCCAGCCACATCCAAAGCTGTGACGATGGGCGTGGACCGTGGCTACAGCTCCCCTGTCCTCTCTTCCCAGGTTGTGTTGGAGGACCTAAGGGATCGCCAGGCCAGCCGGGCCCCCCCGGCCCCCCAGGTGCCAAAGGCCTCAGAGGGCCTCCGGGATTATCGGGAACTGATGGAGCACCGGGGCTCAAGGGTCTCCCGGGAGATCCAGGTCAAGAGGGATTCCCAGGACCCCCAGGTGAGTCAGGACGGGACTCCCGCTCGGCCACGTAGATTCAGGGAAGGAGTGGCGACAAGGGAGCTCTGGGGAGAGTGGGCCTTCACGGCGAGATCGGCCCCATCGGTGACTTTGGTGAGTGTTGCTGGGATGGTGAAAACAGGGCATCCCCGATCCAGAGCATCCCGGGCAGTGTGGAGACATCAGGCCTGTGATATTGGAAGTACTATAGACCTTCCAGGAAGTCCAGGCCTRAAGGGGGAAGGAGGCACCGCTGGAGCACCAGGTCTGCCCGGCCTCCGCGGCATCGGCGGATTACACGGCTTGCCAGGCACCAAAGGCTTCCCAGGATCCCCAGGTGCGGACATCCACGGGGATGCCGGCTTCCCAGGTCCTGCYGGGGCCAGGGGTGACCCAGGAGAGGCCAACACCCTTCCAGGCCCCACAGGAGCCCCGGGACGGAAAGGGGAGCGTGGAGTCCCAGGGGAACGAGGCCCGGTCGGGAGTCCAGGACTTCAGGGSTTTCCAGGCATCACCCCCCCTTCCAACATCTCTGGGTTACCAGGTGACGTAGGTGCGCCTGGGATATTTGGCCTGGAAGGTTATCGAGGTCCCCCGGGGCCACCTGGGCCCGTGGCTCTTCCTGGAATCAAAGGAGATGAGGGGAGTCCAGGAGCCCCCGGAAACCCAGGGACCAAAGGATGGGTCGGGGACTCCGGGCCCCAGGGCCGGCCTGGCGTGTTCGGGCTCCTGGGAGAAAAAGGTGCCCCGGGTGCTGTGGGCGCCCCGGGGATTGCAGGAATCCCCCAGAGGATTGCCATCCAGCGGGGGCCGGTGGGTCCGCAGGGAAGGAGAGGCCCTCCGGGGCCTCAGGGGGAGATGGGACCCCAGGGCCGCCCAGGAGAACCAGGGGAGCCAGGCCGCCCCGGGAGCCCCGGCCTGCCTGGCATGCCCGGCCGCAGCGTCAGCATCGGCCACCTCCTGGTGAAGCACAGCCAGACAGAGCAGGAGCCCATGTGCCCCGTGGGCATGAACAAGCTCTGGAGCGGATACAGCCTGCTGTACTTTGAGGGCCAGGAGAAGGCCCACAACCAGGATCTGGGGCTGGCGGGCTCCTGCCTGGCCCGGTTCAGCACCATGCCCTTCCTGTACTGCAACCCTGGCGATATCTGCTACTACGCCAGCCGGAACGACAAGTCCTACTGGCTCTCCACCACCGCCCCGCTGCCCATGATGCCTGTGGCCGAGGAGGACATCAGGCCCTACATCAGCCGCTGCTCCGTGTGCGAGGCCCCGGCCGTTGCCATCGCCGTCCACAGCCAGGACGTCTCCATCCCCCACTGCCCGCCTGGATGGCGGAGCTTGTGGATCGGATATTCCTTCCTCATGCACACGGCCGCGGGCGACGAAGGGGGTGGCCAGTCGCTGGTGTCACCGGGCAGCTGCCTGGAGGACTTCCGAGCCACGCCATTCATCGAGTGCAACGGCGCCCGAGGCACCTGCCACTACTATGCCAACAAGTACAGCTTCTGGCTCACCACCATCCCCGAGCAGAGCTTCCAGGGCACACCCTCGGCCGACACGCTCAAGGCCGGCCTCATTCGCACACACATCAGCCGCTGCCAGGTGTGCATGAAGAACCTGTGA

Related Sequences

bmy_03977T0 SequenceType object (3)

Length: 856 aa      View alignments
>bmy_03977T0
MGEPGPPGPPAYSPYPSLAKGARGDPGFQGAPGDPGARGEPGDPGFPGLPGTSIGDEDEKRGLPGEMGPKGFTGEQGIPALYPGPPGADGKPGLRGPPGIPGPPGPDGFLFGLKGAKGRVGYPGPSGFPGARGQKGWKGNDGDCQCAEGDQFIGGLPGPPGPKGFPGTNGEPGRKGSPGDPGQHGIPGFPGFKGASGDVGPPGPKGMKGDSRTITTKDCDTGMKRPIGAEEQETVRPATSKAVTMGVDRGYSSPVLSSQVVLEDLRDRQASRAPPAPQVPKASEGLRDYRELMEHRGSRVSREIQVKRDSQDPQVSQDGTPARPRRFREGVATRELWGEWAFTARSAPSVTLVSVAGMVKTGHPRSRASRAVWRHQACDIGSTIDLPGSPGLKGEGGTAGAPGLPGLRGIGGLHGLPGTKGFPGSPGADIHGDAGFPGPAGARGDPGEANTLPGPTGAPGRKGERGVPGERGPVGSPGLQGFPGITPPSNISGLPGDVGAPGIFGLEGYRGPPGPPGPVALPGIKGDEGSPGAPGNPGTKGWVGDSGPQGRPGVFGLLGEKGAPGAVGAPGIAGIPQRIAIQRGPVGPQGRRGPPGPQGEMGPQGRPGEPGEPGRPGSPGLPGMPGRSVSIGHLLVKHSQTEQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPPGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKNL*