Sequence detailsbmy_04027 (Coding sequence)

Part of scaffold_128 (SequenceType object (1))

For more information consult the page for scaffold_128 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CLN5ENSTTRG00000001419 (Bottlenosed dolphin)

Gene Details

ceroid-lipofuscinosis, neuronal 5

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000001337, Bottlenosed dolphin)

Protein Percentage 81.13%
cDNA percentage 83.29%
Ka/Ks Ratio 0.53763 (Ka = 0.046, Ks = 0.0856)

CLN5ENSBTAG00000018846 (Cow)

Gene Details

Ceroid-lipofuscinosis neuronal protein 5

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000025093, Cow)

Protein Percentage 92.44%
cDNA percentage 93.84%
Ka/Ks Ratio 0.2904 (Ka = 0.04, Ks = 0.1378)

CLN5 (Minke Whale)

Gene Details

ceroid-lipofuscinosis, neuronal 5

External Links

Gene match (Identifier: BACU011833, Minke Whale)

Protein Percentage 99.67%
cDNA percentage 99.44%
Ka/Ks Ratio 0.08626 (Ka = 0.0015, Ks = 0.0176)

Additional orthologs identified in other species via the OPTIC pipeline.

CLN5 (Human)   Cln5 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1074 bp    Location:298450..308049   Strand:+
Raw sequence 
>bmy_04027
ATGGCGCAGGCGGGGAGAGCTGGTCCCGGGGCCTGGGGGCGGCGGGGTGCGGGCGCGGATGCAGCTCCGATCTGCGCGCCTTGGTGCTGGGCCTCCGCGCTGCTCTGGCTGGCGGCGGCAGCGGCGGCGGCGACCGGCCCCTCCCGGCGCCAGTGGCCGGTGCCCTACAAACGCTTTTCCTTCCGTCCGGAACCAGATCCTTACTGTCAAGCTAAATACACTTTCTGTCCCACTGGCTCCCCTATCCCAGTGATGAAGGATGATGATGTCATTGAAGTCTTTCGATTACAAGCCCCAGTGTGGGAATTTAAATATGGAGACCTCCTGGGACACTTGAAAATTATGCACGATGCCATTGGATTCAGGAGTACTTTAACTGAAAAGAACTACACAATGGAATGGTATGAACTTTTCCAGCTTGGAAACTGCACATTTCCCCATCTCCGACCTGAAATGAATGCCCCTTTCTGGTGTAATCAAGGAGCTGCCTGCTTTTTTGAAGGAATTGATGATATTCACTGGAAGGAAAATGGGACGTTAGTTCTAGTAGCAACCATATCAGGAGACATATTTAACAAAATGGCAAAGTGGGTAAAACAGGACAATGAAACAGGGATTTATTATGAGACATGGACGGTCCAAGCCAGCTCAGAAAAAGGGGCAGAGACATGGTTTGAATCCTACGACTGTTCTAAATTTGTGTTAAGGACATATAAGAAGTTGGCTGAACTTGGAGCAGACTTCAAGAAGATAGAAACCAACTATACAAGAATATTTCTTTACAGTGGAGAACCTACTTACTTGGGAAATGAAACATCTGTTTTTGGGCCAACAGGAAACAAGACTCTTGCTTTAGCCATAAAAAGATTTTATTACCCTTTCAAACCACATTTGTCAACTAAAGAGTTTCTTTTGAGTCTCTTGCAAATTTTTGATGCCGTGATTATACACAGACAGTTCTATTTGTTTTATAATTTTGAATATTGGTTTTTACCTATGAAATTCCCTTTTATTAAAATAACATATGAAGAAATCCCTTTACCTAACAGAAACAGAACACTCTCTGGTTTATAA

Related Sequences

bmy_04027T0 SequenceType object (3)

Length: 358 aa      View alignments
>bmy_04027T0
MAQAGRAGPGAWGRRGAGADAAPICAPWCWASALLWLAAAAAAATGPSRRQWPVPYKRFSFRPEPDPYCQAKYTFCPTGSPIPVMKDDDVIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTEKNYTMEWYELFQLGNCTFPHLRPEMNAPFWCNQGAACFFEGIDDIHWKENGTLVLVATISGDIFNKMAKWVKQDNETGIYYETWTVQASSEKGAETWFESYDCSKFVLRTYKKLAELGADFKKIETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLALAIKRFYYPFKPHLSTKEFLLSLLQIFDAVIIHRQFYLFYNFEYWFLPMKFPFIKITYEEIPLPNRNRTLSGL*