Sequence detailsbmy_04095 (Coding sequence)

Part of scaffold_127 (SequenceType object (1))

For more information consult the page for scaffold_127 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CHST1ENSTTRG00000017373 (Bottlenosed dolphin)

Gene Details

carbohydrate (keratan sulfate Gal-6) sulfotransferase 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000016464, Bottlenosed dolphin)

Protein Percentage 98.6%
cDNA percentage 98.41%
Ka/Ks Ratio 0.05588 (Ka = 0.0054, Ks = 0.0967)

CHST1 (Minke Whale)

Gene Details

carbohydrate (keratan sulfate Gal-6) sulfotransferase 1

External Links

Gene match (Identifier: BACU020575, Minke Whale)

Protein Percentage 98.59%
cDNA percentage 98.78%
Ka/Ks Ratio 0.06832 (Ka = 0.0033, Ks = 0.0481)

Additional orthologs identified in other species via the OPTIC pipeline.

CHST1 (Cow)   CHST1 (Human)   Chst1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1236 bp    Location:88282..81348   Strand:-
Raw sequence 
>bmy_04095
ATGCAATGTTCCTGGAAGGCCGTCCTCCTCCTTGCCCTGGCCTCCATCGCCATCCAGTACACGGCCATTCGCACCCTCACCGCCAAGTCCTTCCACACCTGCCCGGGTCTGGCGGAGGCGGGGCTGGCCGAGCGGCTGTGCGAAGAGAGCCCCACCTTCGCCTATAACCTCTCCCGCAAGACTCACGTCCTCATCCTGGCCACCACGCGCAGCGGCTCCTCCTTCGTGGGCCAGCTCTTCAACCAGCACCTGGACGTCTTCTACCTGTTTGAGCCCCTCTACCACGTCCAGAACACGCTGATCCCCCGCCTCACCCAGGGCAAGAGCTCCGCGGATCGGCGGGTCATGCTGGGAGCCAGCCGTGACCTCCTGAGGAGCCTCTACGACTGTGACCTCTACTTCCTGGAGAACTACATCAAGCCGCCGCCCGTCAACCACACCACCGACAGGATCTTCCGCCGCGGGGCCAGCAGGGTACTGTGCTCTCGCCCCGTGTGCGAGCCTCCGGGCTCCGCGGACCTGGTGCTGGAGGAGGGGGACTGCGTGCGCAAGTGCGGCCTGCTGAACTTGACGGTGGCCGCCGAGGCCTGTCGGGAGCGCAGCCACGTGGCCATTAAGACGGTGCGGGTGCCCGAGGTTAACGACTTGCGGGCCCTGGTTGAAGACCCCCGGTTAAACCTCAAGGTCATCCAGCTGGTCCGAGACCCACGTGGCATTCTGGCTTCCCGCAGCGAGACCTTCCGCGACACGTACCGGCTTTGGCGGCTCTGGTACGGCACCGGGAGGAAGCCCTACAACCTGGACGTGACGCAGCTGACCACGGTGTGCGAGGACTTCTCCAACTCCGTGTCCACCGGCCTCATGCGGCCCCCGTGGCTCAAGGGCAAGTACATGCTGGTGCGCTACGAGGACCTGGCCAGGAACCCCATGAAGAAGACCGAGGAGATCTACGGCTTCCTGGGCATCCCCTTGGACAGCCACGTGGCGCGCTGGATCCAGAACAACACGCGGGGAGACCCCACCCTGGGCAAGCACAAATACGGCACCGTGCGAAACTCGGCGGCCACGGCCGAGAAGTGGCGCTTCCGCCTCTCCTACGACATCGTGGCCTTTGCCCAGAACGCGTGTCAGCGGGTGCTGGCGCAGCTGGGCTACAAGATGGCCAACTCGGAGGAGGAGCTCAAGAACCCCTCCATCAGCCTGGTGGAGGAGCGGGACTTCCGCCCTTTCTCGTGA

Related Sequences

bmy_04095T0 SequenceType object (3)

Length: 412 aa      
>bmy_04095T0
MQCSWKAVLLLALASIAIQYTAIRTLTAKSFHTCPGLAEAGLAERLCEESPTFAYNLSRKTHVLILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPRLTQGKSSADRRVMLGASRDLLRSLYDCDLYFLENYIKPPPVNHTTDRIFRRGASRVLCSRPVCEPPGSADLVLEEGDCVRKCGLLNLTVAAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLDVTQLTTVCEDFSNSVSTGLMRPPWLKGKYMLVRYEDLARNPMKKTEEIYGFLGIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQRVLAQLGYKMANSEEELKNPSISLVEERDFRPFS*