Sequence detailsbmy_04113 (Coding sequence)

Part of scaffold_127 (SequenceType object (1))

For more information consult the page for scaffold_127 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ATG13ENSTTRG00000000447 (Bottlenosed dolphin)

Gene Details

autophagy related 13

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000000419, Bottlenosed dolphin)

Protein Percentage 91.27%
cDNA percentage 90.99%
Ka/Ks Ratio 0.09679 (Ka = 0.0021, Ks = 0.0221)

ATG13ENSBTAG00000017325 (Cow)

Gene Details

Autophagy-related protein 13

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000023036, Cow)

Protein Percentage 87.45%
cDNA percentage 87.94%
Ka/Ks Ratio 0.38579 (Ka = 0.097, Ks = 0.2514)

ATG13 (Minke Whale)

Gene Details

autophagy related 13

External Links

Gene match (Identifier: BACU018369, Minke Whale)

Protein Percentage 91.43%
cDNA percentage 93.85%
Ka/Ks Ratio 0.93626 (Ka = 0.0639, Ks = 0.0683)

Additional orthologs identified in other species via the OPTIC pipeline.

ATG13 (Human)   Atg13 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1491 bp    Location:960539..985877   Strand:+
Raw sequence 
>bmy_04113
ATGGAAACTGATCTCAATTCCCAGGACAGAAAGGACCTGGACAAGTTCATTAAGTTTTTTGCCCTCAAGACTGTCCAAGTGATTGTCCAGGCTCGACTGGGCGAGAAGATTTGTACTCGTTCATCTTCTTCCCCAACGGGTTCAGACTGGTTCAATTTAGCAATCAAAGACATCCCAGAGGTTACACATGAAGCAAAGAAGGCGCTGGCAGGGCAGCTGCCTGCCGTCGGGAGGTCTATGTGTGTGGAGATCTCACTCAAGACTTCTGAGGGAGATTCCATGGAGCTAGAAATCTGGTGTCTGGAAATGAATGAAAAGTGTGATAAAGAAATCAAAGTTTCCTATGCCGTGTACAACAGACTGTCGTTGCTACTGAAGTCTCTCCTTGCTATAACTAGGGTGACACCAGCTTACAGACTCTCCAGGAAACAAGGGCATGAATATGTCATATTGTACAGAATATATTTTGGGGAAGTTCAGCTGAATGGCTTAGGAGAAGGTTTCCAGACAGTTCGTGTTGGGACAGTGGGTACCCCTGTGGGCACCATCACTCTTTCTTGTGCTTACAGAATTAACTTGGCATTCATGTCCACCAGAACCGCTGGTGAGGACACTGGAGTAACATATCCTTCTGTGGAAGATTCTCAAGAAGTGTGTACCACCTCTTTTTCCACCTCCCCTCCATCCCAGTGTGTGTTTACTGTCACAAAGGCACATTTTCAGACCCCTACTCCTGTGGTGACGGACACTCTGAGGGTCCCCATGGCAGGACTGGCCTTTTCCCATCAACTAATGGTTCCTGGGAAGGAAGGTGGGGTACCCCTTGCTCCCAACCAGCCTGCCCACGGTGCCCAGGCTGGTGACCAGGAGAGACTGGCAACCTACACCCCTTCCGATGGGGCCCACTGCGCTGCCACACCTTCCAGCAGTGAGGATACTGAAACTGTGTCAAACAGCAGTGAGGGACGGGCCTCCCCCCATGATGTCTTGGAGACCATCTTTGTCCGGAAAGTGGGGGCTTTTGTCAACAAACCCATCAACCAGGTGACCCTGACCAGTTTGGACATACCCTTTGCCATGTTTGCTCCCAAGAATTTGGAGCTGGAGGATGTGGATCCCATGCCAGTGCCCAGAACCAGCCCCTACCTCTGCCTTATTCTGAAACAGGTGAATCCTCCAGATTCCCCAGAGACTACATCTCCTCTTCAGGGCAGCCTGCACTCTGATGGCTCCAGCGGGGGCAGCAGTGGCAATACCCAGGACGACTTTGTCATGATCGACTTCAAACCAGCTTTTTCTAAAGACGACATTCTTCCGATGGACTTGGGGACCTTCTATCGTGAATTTCAGAACCCCCCTCAGCTGAGCAGCCTCTCCATAGATATCGGGGCACAGTCCATGGCTGAGGACTTGGACTCACTACCAGAGAAGCTGGCTGTGCACGAGAAGAATGTCCGAGAATTTGATGCCTTTGTAGAAACCCTGCAGTAA

Related Sequences

bmy_04113T0 SequenceType object (3)

Length: 497 aa      View alignments
>bmy_04113T0
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYAVYNRLSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPVGTITLSCAYRINLAFMSTRTAGEDTGVTYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFSHQLMVPGKEGGVPLAPNQPAHGAQAGDQERLATYTPSDGAHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDVDPMPVPRTSPYLCLILKQVNPPDSPETTSPLQGSLHSDGSSGGSSGNTQDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ*