Part of scaffold_132 (Scaffold)

For more information consult the page for scaffold_132 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SOX5 ENSTTRG00000013040 (Bottlenosed dolphin)

Gene Details

SRY (sex determining region Y)-box 5

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012374, Bottlenosed dolphin)

Protein Percentage 88.19%
cDNA percentage 90.28%
Ka/Ks Ratio 0.69335 (Ka = 0.0954, Ks = 0.1375)

SOX5 ENSBTAG00000022360 (Cow)

Gene Details

transcription factor SOX-5

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000030245, Cow)

Protein Percentage 88.02%
cDNA percentage 88.25%
Ka/Ks Ratio 0.34467 (Ka = 0.0934, Ks = 0.2709)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1731 bp    Location:599423..207367   Strand:-
>bmy_04176
ATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAGGATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCATGAAGTTGATGGCAATAAAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGTGGCGAGTCCTTGTCTAGTACAGCCCTGGGGACTCCTGAGCGGCGCAAAGGCAGCTTAGCTGATGTTGTTGACACCTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAATGAGCCAGAAGAAACCCCCAGTATTGAAAAGCTACTATCAAAGGACTGGAAAGACAAGCTTCTTGCAATGGGATCAGGGAACTTTGGTGAAATAAAAGGGACTCCCGAAAGCCTCGCTGAGAAGGAGAGACAGCTCATGGGGATGATCAATCAGCTCACCAGCTTGCGAGAGCAGCTGTTGGCTGCCCATGATGAGCAGAAGAAACTGGCTGCATCTCAGATCGAGAAACAGCGCCAGCAAATGGAGCTGGCCAAGCAGCAGCAAGAACAGATTGCAAGACAACAGCAGCAGCTTCTGCAGCAACAACACAAAATCAATTTGCTTCAGCAACAGATCCAGGTCAGAAATCATGAAAAGAACGGTGGTGACCCTTACCCTGTACAGCTGATCCCAACTACCATGGCAGCTGCTGCTGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGATTGAGGTAGAGAGGTTGGTTCTGTACATTCAGAGTGCCGAACATGAAATGACAGTGACCAATGTTGACTTAATGTGGATGTTTAATAATGAAAAAAAGTGTGTCAGTCCCAGCATTAGTTACAAATGGCAATATTTTAATAGACTGAAAAACAATAATGCAAGGAAGGGAATTGCCATAAGTTTTAACACTAACGTGAAGCAATGTTCCCTGTTTTTAGGAAGTGCTGGAGTCTCAGAATCAAGAATTTATAGAGAATCCAGGGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGAAGGAAAATCCTTCAAGCCTTTCCTGACATGCACAATTCCAACATCAGCAAGATACTGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTGAGCAAGCAGCACCTGGAGAAGTACCCTGACTACAAATACAAGCCCAGGCCGAAGCGCACCTGCCTGGTGGATGGCAAAAAGCTGCGCATCGGGGAATACAAGGCAATCATGCGGAACAGGCGGCAGGAAATGCGGCAATACTTCAATGTTGGGCAACAAGCACAGATCCCCATCGCCACTGCTGGTGTCGTGTACCCTGGAGCCATCGCCATGGCTGGAATGCCCTCCCCTCATCTGCCCTCGGAGCACTCAAGCGTGTCCAGCAGCCCGGAGCCTGGGATGCCTGTTATCCAGAGCACTTACGGCGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGATCCAGGCTGAGGACATCAACGGAGAAATTTATGATGAGTACGAGGAGGAAGAGGATGATCCAGATGTAGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAAGCCAACTGA

Related Sequences

bmy_04176T0 Protein

Length: 577 aa      View alignments
>bmy_04176T0
MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVRNHEKNGGDPYPVQLIPTTMAAAAAATPGLGPLQLQIEVERLVLYIQSAEHEMTVTNVDLMWMFNNEKKCVSPSISYKWQYFNRLKNNNARKGIAISFNTNVKQCSLFLGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYEEEEDDPDVDYGSDSENHIAGQAN*