Part of scaffold_138 (Scaffold)

For more information consult the page for scaffold_138 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

UPK3A ENSTTRG00000000965 (Bottlenosed dolphin)

Gene Details

uroplakin 3A

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000909, Bottlenosed dolphin)

Protein Percentage 95.45%
cDNA percentage 96.59%
Ka/Ks Ratio 0.23345 (Ka = 0.0217, Ks = 0.0931)

UPK3A ENSBTAG00000009913 (Cow)

Gene Details

Uroplakin-3a

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000013081, Cow)

Protein Percentage 92.05%
cDNA percentage 91.79%
Ka/Ks Ratio 0.12033 (Ka = 0.0414, Ks = 0.3442)

UPK3A  (Minke Whale)

Gene Details

uroplakin 3A

External Links

Gene match (Identifier: BACU013469, Minke Whale)

Protein Percentage 97.35%
cDNA percentage 98.11%
Ka/Ks Ratio 0.21373 (Ka = 0.0114, Ks = 0.0533)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 795 bp    Location:1587102..1579485   Strand:-
>bmy_04244
ATGCCTCCGCTCTGGGTCCTGCTGGCCCTCGGCTGCCTGCGACTTGGCTCAGGTGTGAACCTCCAGCCCCAGCTGGCTAGTGTGACCTTTGCCACCAGCAACCCCACACTCACCACTGTGGCCTTGGAAAAGCCTCTCTGCATGTTTGACAGCTCAGTGGCCCTCCATGGCACCTACGAGATCTACCTCTATGTCCTGGTCAATTCGGAGGGAGGGAGGACAGGCCCCTACAAGGCGGCGGCCTTTGACCTGACCCCCTGCAGCGACCTGCCCAGCTTGGATGCTGTCAGGGATGTGTCCCGGGCCTCGGAGATCCTGAACGCATACCTGGTCAGGGTGGGCACCAATGGGACCTGCCTGTCTGACCCCAACTTCTGGGGCCTCTGCAACCCACCCCTGTCAGCAGCCACGGAATACAGATTCAAGTACGTCCTGGTCAATATGTCCACAGGCTTGGTACAGGACCAGACCCTGTGGTCGGACCCCATCCGCACTAACCGACTCGCTCCGTACTCGGCGATCGACACGTGGCCGGGCCGGCGGAGCGGGGGCATGATTGTCATCACGTCCATCCTGGGCTCCCTGCCCTTCTTCTTGCTCATTGGCTTTGCTGGCGCCATTGTCCTCAGCCTCGCGGACGTGGCCAGTGCTGACGGGGAAACAGCCCACGACTCCCAGATCACGCAGGAGGCCGTCCCCAAGTCCTTGGGGACCTCGGAGCCTTCGTACACGTCTGTGAACCGGGGGCCGCCCCTGGACAGGGCCGAGGTGTATGCCAGCAAGCTCCAGGACTGA

Related Sequences

bmy_04244T0 Protein

Length: 265 aa      View alignments
>bmy_04244T0
MPPLWVLLALGCLRLGSGVNLQPQLASVTFATSNPTLTTVALEKPLCMFDSSVALHGTYEIYLYVLVNSEGGRTGPYKAAAFDLTPCSDLPSLDAVRDVSRASEILNAYLVRVGTNGTCLSDPNFWGLCNPPLSAATEYRFKYVLVNMSTGLVQDQTLWSDPIRTNRLAPYSAIDTWPGRRSGGMIVITSILGSLPFFLLIGFAGAIVLSLADVASADGETAHDSQITQEAVPKSLGTSEPSYTSVNRGPPLDRAEVYASKLQD*