Part of scaffold_138 (Scaffold)

For more information consult the page for scaffold_138 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NUP50 ENSTTRG00000000961 (Bottlenosed dolphin)

Gene Details

nucleoporin 50kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000905, Bottlenosed dolphin)

Protein Percentage 94.67%
cDNA percentage 93.75%
Ka/Ks Ratio 0.12218 (Ka = 0.0156, Ks = 0.1277)

BT.37218 ENSBTAG00000017652 (Cow)

Gene Details

nuclear pore complex protein Nup50

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023480, Cow)

Protein Percentage 90.11%
cDNA percentage 90.75%
Ka/Ks Ratio 0.20876 (Ka = 0.0519, Ks = 0.2486)

NUP50  (Minke Whale)

Gene Details

nucleoporin 50kDa

External Links

Gene match (Identifier: BACU018426, Minke Whale)

Protein Percentage 97.23%
cDNA percentage 98.51%
Ka/Ks Ratio 0.64869 (Ka = 0.0113, Ks = 0.0175)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1845 bp    Location:1682349..1662405   Strand:-
>bmy_04246
ATGCGCCGCGTGACGCCCCGCTGCCGCCGTAGGAGGAGCTGCAAACCAAGGCTCCGGCGCACTTGCGTAGTAGCTGGACGCGGGCGTTTCTTTCCTCCCTTTTTTTCGAATTGGTCGAGTAGAGTCGAGTTACAAAATGGCGGCGTGGTGCGTGTGGGCCGTCGTTCTCCTAAAGGTCTCCTGCTGAACGGACGATTCTCCCCCTCACTGCCCAACGCAGAGAGACGAGGTCCCCGAGGGACATGGTGTTTGAGACTCAGGGCTTGCCGACCACCGAATCCTTCGAGTCTCTCAGCGCACCGGAAGCGACCGGGCGCCGCTTCAGACCCGAGCGCCGCGGCCGCGACCTCGCACCTGCCCGCCGCTACGCACCCGGGCTTCGCCGCACCCACAACCCAGCGAGGGCCGCGGCTGCCGCCGGCGAGGTTCGAAAAAATGGCCAAAAGAATTGCCGAGAAGGAATTGACGGATAGGAATTGGGATCAAGAAGATGAAGCAGAAGAGGTGGGAACATTCTCCGTGGCCAGTGAGGAAGTCTTGAAGAATAGAGCCATAAAGAAAGCAAAGCGTAGAAATGTTGGATTTGAATCTGATAGTGGAGGGGCCTTTAAAGATTTTAAAGGCTTGGTTGTACCTTCTGAAGGAGGAGGGTTTTCTGGATTTGGTACTGGTGCTGGAGGGAAGCCTTTGGAAGGACTGTCAAACGGAAACAGCATAACTAGTGCCCCGCCCTTCTCCAGTGCAAGGACAGCAACCGACACCAAGGCCACCTTCGGGTCTGTTGCTGTAAACGGCCCTACCTCCTTGGTCGATAAAAAGATTTCAAATCCCAAAACTAATGGCGACAGTCAGCAGCCTGCCTCCTCTGGCCTTACCTCCAGTGCCGCCCGCCACAGGAACGCCTATCATAAGCAGTTGGCGGCCTTAAACTGCTCTGTTCGGGATTGGATCGTGAAGCACGTGAATACAAACCCGCTCTGTGATCTGACACCTATCTTTAAAGACTATGAGAAATACTTAGCAGGCATCGAACAGCAACATGGGAACAGTGGCAGCAGTAATTCTGAAGGTGAAACCAACAAAATATCAGTTGAAACACAGCCTCCTTCCCTGTTTGGTTCAACAGAATTACAGCAAGAGTCAACATTTTTGTTTCATGGCAACAAAACTGAGGATACATCTGAAAAGAAGGTGGAGGCTGTGTCTGAAAAGAACAAGGACCCGTCACTAGGAGCAACAAGTGCCTCATTTAATTTCGGCAAGAAAATTGATAGTTCTGTTTTGGGCTCCTTAAACTCTGGCCCCTTGACTGGATTTTCATTTTCTTCTGGAAACTCCAGTTTATTTGGCAAAGATATTGCCCAGAGTAAACCAGTTTCTTCACCATTTTCCACTAAAACGTTGGAGAGCCGAGCAGAAGGTGGCGGTAACGACTGCAAAGGTGGAGATGAAGAAGAGAATGATGAGCCACCCAAAGTAGTAGTTACTGAAGTAAAAGAAGAAGATGCTTTTTACTCCAAAAAGTGTAAACTATTTTACAAGAAAGACAGTGAATTTAAAGAGAAGGGTGTAGGCACTCTGCATTTAAAACCTACAGCTAATCAGAAGACTCAGCTTTTAGTGCGGGCAGACACCAATTTAGGCAACATACTGCTCAACGTTCTCATTCCCCCCAACATGCCGTGCACGCGCACCGGGAGAAACAACGTGCTTATTGTCTGCGTCCCAAACCCGCCCACTGATGAGAAGAACGCCACCACCCCGGTCACCATGTTGATTCGGGTCAAAACAAGCGAGGATGCGGATGAGCTGCACACGATTTTACAGGAGAAAAAGGATGCCTGA

Related Sequences

bmy_04246T0 Protein

Length: 615 aa      View alignments
>bmy_04246T0
MRRVTPRCRRRRSCKPRLRRTCVVAGRGRFFPPFFSNWSSRVELQNGGVVRVGRRSPKGLLLNGRFSPSLPNAERRGPRGTWCLRLRACRPPNPSSLSAHRKRPGAASDPSAAAATSHLPAATHPGFAAPTTQRGPRLPPARFEKMAKRIAEKELTDRNWDQEDEAEEVGTFSVASEEVLKNRAIKKAKRRNVGFESDSGGAFKDFKGLVVPSEGGGFSGFGTGAGGKPLEGLSNGNSITSAPPFSSARTATDTKATFGSVAVNGPTSLVDKKISNPKTNGDSQQPASSGLTSSAARHRNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLAGIEQQHGNSGSSNSEGETNKISVETQPPSLFGSTELQQESTFLFHGNKTEDTSEKKVEAVSEKNKDPSLGATSASFNFGKKIDSSVLGSLNSGPLTGFSFSSGNSSLFGKDIAQSKPVSSPFSTKTLESRAEGGGNDCKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDSEFKEKGVGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGRNNVLIVCVPNPPTDEKNATTPVTMLIRVKTSEDADELHTILQEKKDA*