Part of scaffold_133 (Scaffold)

For more information consult the page for scaffold_133 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ERCC6 ENSTTRG00000014718 (Bottlenosed dolphin)

Gene Details

excision repair cross-complementing rodent repair deficiency, complementation group 6

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013957, Bottlenosed dolphin)

Protein Percentage 83.49%
cDNA percentage 86.01%
Ka/Ks Ratio 0.57824 (Ka = 0.1116, Ks = 0.1929)

ERCC6 ENSBTAG00000032527 (Cow)

Gene Details

DNA excision repair protein ERCC-6

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000043469, Cow)

Protein Percentage 77.85%
cDNA percentage 81.53%
Ka/Ks Ratio 0.41398 (Ka = 0.1648, Ks = 0.398)

ERCC6  (Minke Whale)

Gene Details

excision repair cross-complementation group 6

External Links

Gene match (Identifier: BACU007604, Minke Whale)

Protein Percentage 86.25%
cDNA percentage 88.42%
Ka/Ks Ratio 0.5199 (Ka = 0.1061, Ks = 0.2041)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3189 bp    Location:1091565..1056023   Strand:-
>bmy_04275
ATGATTACCAAGTACCAGCAGACAGGTGTTAGGTGGCTGTGGGAATTGCACTGCCAGCAGGCAGGAGGAATTCTGGGAGATGAAATGGGATTGGGCAAGACCATCCAGATAATTGCCTTCTTGGCAGTGGGGGACATCAAAGGAAAATTTTTACGAGACAGTGGAGCTGTAGGGCAGGAGAAATTAAACATGAGACCGGGTGAGCATTACAATGAACTCGGAGTCCTCCTCTGTGTTTATGTCCGAAAGAAAAATAGCCAGATGAATAGTCAAACGAAGTTCTGCATGAACCGGCATTGCTTCATGGGCTATTTGATCATCCATATGCTGTCCTTCATGGTTGTCTTTTCTTCTTGGACATTTTGGGTGCAGGTTCGAGGGGTTGGGTCCGACTATAATTGTCTGTCCGACGACAGTGATGCATCAGTGGGTGAAGGAATTTCACACGTGGTGGCCTCCATTCAGAGTGGCAGTTCTGCACGAAACTGGGTCCTTTACCCACAAAAAGTTCTACAGTCTATCACTTTTCTGGAGAAACTAATTCAAGATATTGCTCATTGTCATGGAATTTTGATCACTTCTTACTCCTACGTTCGACTGATGCAAGATGATATTAGCAGGCATGACTGGCACTATGTGATCTTGGACGAAGGACACAAAATTCGGAATCCAAATGCTGCCATCACTCTTGCTTGCAAACAGTTCCGCACCCCTCATCGCATCATCCTGTCTGGCTCACCGATGCAGAATAACCTCCGTGAACTGTGGTCACTCTTTGATTTCATCTTCCCGGGAAAGTTGGGCACGTTACCTGTGTTTATGGAGCAGTTCTCAGTCCCCATCACCATGGGGGGGTATTCAAATGCCTCCCCAGTACAGGTTAAAACTGCGTATAAGTGTGCATGTGTTCTACGAGATACCATAAATCCATACCTACTGCGGAGAATGAAGTCGGATGTCAAAATGAGCCTTTCTTTGCCAGATAAAAACGAACAGGTCTTATTTTGCCGTCTTACAGATGAGCAACATAAAGTCTACCAAAATTTCATTGATTCCAAAGAAGTTTACAGAATTCTCAATGGAGAGATGCAGATTTTCTCTGGACTTGTAGCCCTAAGAAAAATCTGCAACCACCCTGATCTCTTTTCTGGAGGCCCCAAGAATCTTAAAGGTATTCCAGATGATGAACTAGGGGAAGATCAGTTTGGACACTGGAAACGTTCTGGGAAAATGATAGTTGTTGAGTCCTTGTTGAAAATATGGCACAAGCAGGGCCAACGAGTATTGCTGTTTTCTCAGTCCAGACAGATGTTGGACATATTTGAAGTATTCCTTAGGGTCCAAAAGTATTCCTATCTCAAGATGGATGGTACCACTGCTATAGCTTCAAGACAACCACTGATTACAAGATACAATGAGGACACATCCATATTTGTGTTTCTTCTGACCACTCGGGTGGGTGGCCTAGGAGTCAACCTGACAGGGGCAAACCGAGTCATCATCTATGACCCTGACTGGAACCCAAGCACAGACGTGCAGGCCCGGGAGCGAGCGTGGCGGATAGGCCAGAAGAAACAGGTGACCGTGTACAGGCTTCTGACCGCAGGCACCATCGAAGAGAAGATTTACCACCGACAAATCTTCAAGCAGTTTTTGACAAATAGAGTGCTAAAAGATCCAAAGCAAAGGCGATTTTTCAAATCCAATGATCTTTATGAGCTGTTTACTCTGACTAGTCCTGATACATCCCAGAGCACTGAAACAAGTGCTATTTTTGCAGGAACTGGTTCAGATGTTCAGACACCCAAACGCCATTTAAAAAGAAAACTTCAACTGGCTTTTGGAACAGACCAGAACATTCCAGTAGGTAAAAAGTTCCCTGGTTCTAACACATCTGCAAATGTTGCCACGTCATCTGAAGAGAAATCTACAGCTATAGGACCTGAAGTGAATGCAGTAACTTCTAATCTAGGTGATCCTTTGAAAGATGCCCCTCAAACATCTTGTAGTCTAACTAACAGTGAGAGGCTTGGAGAAGAGACAGATGCAGTGTCCAGACTGCAGGATTCCTCAGTGATTCATGGAAACAGGGAAGGTTCAGATTCTCCAAGAATCAGCAAAATGTACAGGATGTCTGGTGAGGAAAGCATCGATGAAAAGGAGGGTCTTTCTGATAAAAGAGAAAGCTGCCGGGTTCAAACAGAACCTCTTTGGGAGAATGAGCAAACAGAAAATAATTTTTATAAGCACAAGTCGAAAACGAAACATCATGTGGCAGAAGAAAAGACCCTGGAGAAACATCTGAGGCCGAAGCAAAAGCTTAAGAGCTCTAAGCACCGCAGAGACGCCAAGTTTGAGGGAACTCGAATTCCACACCTGGTGAAGAAGAAGCAGTACCGGAGGCAAGACAATGAAAATGAGAGCGAGCCCAAGGAACGCAGCCATGACGACTRCGTCCTGGAAAAGCTTTTCAGAAAATCAGTGGGTGTGCACAGCATCATGAAGCATGATGCCATCATGGACGGAGCCAGTCCAGACTACGTGCTGGTGGAGGCGGAGGCCAACCGTGTGGCCCAGGATGCCCTCAAAGCACTGAGACACTCTCGGCAGCGGTGTCTGGGAGCAGCATCTGGTGTTCCCACCTGGACCGGCCACAGGGGGGTGGCTGGTGCACCAGCAGGAAGAAGGAGCAGATTTGGTCAGAAAAGGAACTCCAGCTTCTCTGTGCAGCATCCCTCTTCAGCGTCTCCAAAGGAGAAATGCCAGGACAGCACTATGAAAAAGGATGGAAAAGATAATGTTTCGGAGCATTTTAGTGGAAAAGTTGAAGATGCAGAGCCTTCATCCGGAGCCCTCACTTCGTCCTCACTGTTGGCTAAAATGAGAGCTAGAAACCACCTAATTTTGCCAGAGCGCTTAGAAAGTGAAAGTGGGTGCCTTCCAGAGGCTTCTGCTCCTCCGCCTTCCAGCATGGAACACGATGACCTTCTGGTAGAAATGAGAAACTTCATTGCCTTTCAGGCCCAAGTTGATGGCCAGGCCAGCACTCGGGAGATACTGCAGGAGTTTGAATCCAAGTTATCGGCATCACAGTCTTGTGTCTTTCGAGAACTATTGAGAAATCTGTGCACTTTTCATAGAACTTCAGGTGGTGAAGGAATTTGGAAACTCAAGCCAGAATACTGCTGA

Related Sequences

bmy_04275T0 Protein

Length: 1063 aa      View alignments
>bmy_04275T0
MITKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAVGDIKGKFLRDSGAVGQEKLNMRPGEHYNELGVLLCVYVRKKNSQMNSQTKFCMNRHCFMGYLIIHMLSFMVVFSSWTFWVQVRGVGSDYNCLSDDSDASVGEGISHVVASIQSGSSARNWVLYPQKVLQSITFLEKLIQDIAHCHGILITSYSYVRLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQIFSGLVALRKICNHPDLFSGGPKNLKGIPDDELGEDQFGHWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDIFEVFLRVQKYSYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDVQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDTSQSTETSAIFAGTGSDVQTPKRHLKRKLQLAFGTDQNIPVGKKFPGSNTSANVATSSEEKSTAIGPEVNAVTSNLGDPLKDAPQTSCSLTNSERLGEETDAVSRLQDSSVIHGNREGSDSPRISKMYRMSGEESIDEKEGLSDKRESCRVQTEPLWENEQTENNFYKHKSKTKHHVAEEKTLEKHLRPKQKLKSSKHRRDAKFEGTRIPHLVKKKQYRRQDNENESEPKERSHDDXVLEKLFRKSVGVHSIMKHDAIMDGASPDYVLVEAEANRVAQDALKALRHSRQRCLGAASGVPTWTGHRGVAGAPAGRRSRFGQKRNSSFSVQHPSSASPKEKCQDSTMKKDGKDNVSEHFSGKVEDAEPSSGALTSSSLLAKMRARNHLILPERLESESGCLPEASAPPPSSMEHDDLLVEMRNFIAFQAQVDGQASTREILQEFESKLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEYC*