Sequence detailsbmy_04389 (Coding sequence)

Part of scaffold_144 (SequenceType object (1))

For more information consult the page for scaffold_144 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SWT1ENSTTRG00000005914 (Bottlenosed dolphin)

Gene Details

SWT1 RNA endoribonuclease homolog (S. cerevisiae)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000005598, Bottlenosed dolphin)

Protein Percentage 90.6%
cDNA percentage 92.83%
Ka/Ks Ratio 0.70885 (Ka = 0.0229, Ks = 0.0322)

C16H1ORF26ENSBTAG00000004492 (Cow)

Gene Details

C16H1ORF26 protein; Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000053406, Cow)

Protein Percentage 83.76%
cDNA percentage 90.31%
Ka/Ks Ratio 0.57338 (Ka = 0.0919, Ks = 0.1603)

SWT1 (Minke Whale)

Gene Details

SWT1 RNA endoribonuclease homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU019079, Minke Whale)

Protein Percentage 98.07%
cDNA percentage 98.97%
Ka/Ks Ratio 1.25168 (Ka = 0.0111, Ks = 0.0088)

Additional orthologs identified in other species via the OPTIC pipeline.

SWT1 (Human)   Swt1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2592 bp    Location:1424001..1331992   Strand:-
Raw sequence 
>bmy_04389
ATGAGGTCAGAGAGTTCCGTTTCCGCGCTTTCCAAAATGTCCAGCAAAGAATCTTGTGGAAGAAAAGAGAAATCTCAGAGAAAAGGCACCGCCCCATCACCCAATGTTGATGAAGAAGATAAGAAAGAGAAAAAAACCTCAGCAAACTTTACTAGTTCAGCTTGTTCTGTAATATCGGTTTCAACAGAGAAGAGAAAACTGAAATCAGATCATACAGATATTCTGTACTGTAATATAAAAAGAAGACAAGAACTGAAAAGACTGAATGTAGAAACTGACACTCCAAGAAAGAGACCAAAAATTAGTTCTTCATCCCAAGGACTTGTTAAACTCCAAGAAACATCATACTCAAATGATAATCAAATTATTTCTCAGAGTCCTTCTTCAAATGGAACTAAAAAAGGTATAAGTAAATGTGTAGATTTTAAAGTTAAAGATATTAAATTGACAAATGTTAAGAGTGAGCTGGACCGTGGAATTAAAAACTTTAGCAGTCCTAAGATTGCCAAAGATGTGAGACCTAAAGCTGAAGGCCAGGCAAGTGAAAAAAAATGGCCTCATTTACTTGCTCAGAGGGAGAAGATGAAGGAACTCAAGAAAGAAAGGTACAAAAAATTTAGAGACAGTTCTGAAAAATATGTTTTGGAGAAATGCAAGAGAATCCAATTTTCTCAGGATTATAAGTCCAACAAGATAATTAAGGAACCCCTCGAATCTAGAAGAAGAAAGATCAATTTCAAAATCCTAGGAGAATCCTGTGAAACCCTCCAGAAGCTTGTAGAAGAAAATGTCTTCAGTTTAGATTCTAACAAGTTAAAGACTAAGCAGGAGAAAAAAGAATGCCTGGAAGGCTCCCAGGTTTCGTTAAATTTGACAAGGCACAAAAGTGAACATTTATTTTCAGATTCCACGTATAAGCAGACTGTTCGTGAGTGGGAAGGAAAATATCATGAGCATCAAAGAAGTAATGATTCAAGTTCTAGTGAAATCCTAACCCAGATGCAGATAGTAGAAGAGCTTCACGCTGCACGTATGGGAAAAAGTGTGGATTTACCTGTGGTTCCACCTTCTGGAGAGTTAACAAGTATGGAGATTGACTTGGTGGAAGATGATGTACATTCCTCTTCTGCAAATACTGCTTCAGACAAAAAGCTTTTAATTGTTGTTGACACAAATATACTGATGAATCATCTCAAATTTGTTAGAATTTTGAAGACAACAGAAATCCAAGGCTTTGACAGGCTTGTGTTAATAATTCCCTGGGTTGTTGTGCAAGAGCTGGATCGTATGAAGGCAGGAAAATTACTGAAACGTGCCAAGCACAAAGCTATACCTGCAGTTCATTTCATCAATGACAGTCTCAAAAATCAAGATAGAAAGCTATGGGGTCAATCAATACAACTTGCATCTCAAAAACTTTATGGATTGAGCGATGAGAACAATGATGATCGTGTATTAAAATGCTGTCTTCAGTACCAAGAATTATTCCCTTGTTCTCTTGTTATTTTGTGCACGGATGATAGAAATTTAAGAAACAAAGGCCTAATAAGTGGTGTGAAGTCACTCAGTAAAGAAGAATTGAGTGCAGAATTATTAAACTTATCTCTGAACACAGTTGTATGTCATCAGCCTTGTATATCTAAACAACAATTGAAAGCAGAAGCAACACCTTTAGAGAAGAGCTGTGAGGAGGAATCTACAAACTCTGGACTATGCATTCTACTTGAAAGCATTGTATCTGATCTCAAAAAATCTCTTGGAACAGCTTTATCTTCAATATTAGAAACAGAAATGAAAATTGCTTTTGGAAACCTTTGGATGGAGGTGCTGTACTTGAAACCACCATGGACTTTAATACATTTATTACAGTGCTTTAGAAAACATTGGTTGGCTGTATTTGGATTAGTTATGGAAAAGAACTTGCTTTTAACTGTTGAGAGCCTATATGAAAATCTCTCTAAAGCTAACAATGCAGTGGATTTTACAACAGTGAAATTCCTGCTTCAGGATTCTGAAAGTTTGCTACATGCTTTCAGTACAAGGTCAAATTATGATGGTATTCTTCCACAGGCCTTTGCTCAAGTAAACAAACTACTCCAAACATTTATAGAGGTCAAGGCAAAACTTAAGCAAAATCCTTCAAAAAATACAGCGGGTAAAAGGCAAGAAGATAATTCTTTGATGAAATCTAATAACCAAGAAATCACCGTTTTCTCAGGTTCTCATCTTCCCCAACCCAACAGGCATCAAGAGATCTGGTCTATCCTAGAGAATGTTTGGATTACAATATATCAAAACAGCATGGATGTGTTTCAAAGATTGGGCTCAAATTCAGCTCTGATGTCTTCAAAAATAGCATCATTTGAAGAAGCATTTGTATATCTTCAAAAGTTAATGGAAGCTGTTAAGGATATTCTTGAAGGAATTCAGAGGATTTTGGCACCCAATAGTAGTTATCAAGATGTTGAGACCCTCTATAACTTCCTAATCAAGTATGAGGTAAATAAAAATGTCAAATTTACTGCCCAGGAACTTTATGATTGTGTTTCACAGGCTGAGTATCGGGGGGAGGGGTGCAAGGGTCGAGCTTGA

Related Sequences

bmy_04389T0 SequenceType object (3)

Length: 864 aa      View alignments
>bmy_04389T0
MRSESSVSALSKMSSKESCGRKEKSQRKGTAPSPNVDEEDKKEKKTSANFTSSACSVISVSTEKRKLKSDHTDILYCNIKRRQELKRLNVETDTPRKRPKISSSSQGLVKLQETSYSNDNQIISQSPSSNGTKKGISKCVDFKVKDIKLTNVKSELDRGIKNFSSPKIAKDVRPKAEGQASEKKWPHLLAQREKMKELKKERYKKFRDSSEKYVLEKCKRIQFSQDYKSNKIIKEPLESRRRKINFKILGESCETLQKLVEENVFSLDSNKLKTKQEKKECLEGSQVSLNLTRHKSEHLFSDSTYKQTVREWEGKYHEHQRSNDSSSSEILTQMQIVEELHAARMGKSVDLPVVPPSGELTSMEIDLVEDDVHSSSANTASDKKLLIVVDTNILMNHLKFVRILKTTEIQGFDRLVLIIPWVVVQELDRMKAGKLLKRAKHKAIPAVHFINDSLKNQDRKLWGQSIQLASQKLYGLSDENNDDRVLKCCLQYQELFPCSLVILCTDDRNLRNKGLISGVKSLSKEELSAELLNLSLNTVVCHQPCISKQQLKAEATPLEKSCEEESTNSGLCILLESIVSDLKKSLGTALSSILETEMKIAFGNLWMEVLYLKPPWTLIHLLQCFRKHWLAVFGLVMEKNLLLTVESLYENLSKANNAVDFTTVKFLLQDSESLLHAFSTRSNYDGILPQAFAQVNKLLQTFIEVKAKLKQNPSKNTAGKRQEDNSLMKSNNQEITVFSGSHLPQPNRHQEIWSILENVWITIYQNSMDVFQRLGSNSALMSSKIASFEEAFVYLQKLMEAVKDILEGIQRILAPNSSYQDVETLYNFLIKYEVNKNVKFTAQELYDCVSQAEYRGEGCKGRA*