Sequence detailsbmy_04439 (Coding sequence)

Part of scaffold_150 (SequenceType object (1))

For more information consult the page for scaffold_150 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SF3B1ENSTTRG00000003414 (Bottlenosed dolphin)

Gene Details

splicing factor 3b, subunit 1, 155kDa

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003203, Bottlenosed dolphin)

Protein Percentage 86.17%
cDNA percentage 85.59%
Ka/Ks Ratio 0.04241 (Ka = 0.0013, Ks = 0.0317)

SF3B1ENSBTAG00000008915 (Cow)

Gene Details

splicing factor 3B subunit 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000011734, Cow)

Protein Percentage 99.92%
cDNA percentage 97.22%
Ka/Ks Ratio 0.00286 (Ka = 0.0004, Ks = 0.1245)

Additional orthologs identified in other species via the OPTIC pipeline.

SF3B1 (Human)   Sf3b1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3777 bp    Location:290524..328711   Strand:+
Raw sequence 
>bmy_04439
ATGGCGAAGATCGCGAAGACCCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAGGAGTGGGCCTTGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGGTTTGCTGGATACGTGACATCTATTGCTGCAACTGAACTTGAAGATGATGACGATGACTACTCATCATCTACAAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCATTGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACCGACCTCCAAAGATTGCAGATCGGGAAGATGAATACAAAAAGCACAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAGACCCCTGATCCTAAAATGAATGCTAGGACTTACATGGATGTAATGCGAGAACAACATTTAACTAAAGAAGAGAGAGAAATTAGGCAACAGCTAGCAGAAAAAGCTAAAGCTGGAGAACTAAAAGTCGTCAATGGAGCAGCAGCATCCCAGCCTCCCTCAAAACGAAAGCGGCGTTGGGATCAAACAGCTGATCAGACTCCTGGTGCCACTCCAAAAAAGCTGTCAAGTTGGGATCAAGCAGAGACCCCTGGACATACCCCTTCCTTAAGATGGGATGAGACACCAGGTCGTGCAAAAGGAAGTGAGACTCCTGGAGCAACCCCAGGCTCAAAAATATGGGATCCTACACCTAGTCACACACCTGCGGGAGCTGCTACCCCTGGACGAGGCGATACACCAGGCCACGCGACACCAGGCCATGGAGGCGCAACTTCCAGTGCTCGTAAAAACAGATGGGATGAGACCCCCAAAACAGAAAGAGATACTCCTGGACATGGAAGTGGATGGGCTGAGACTCCTCGAACAGATCGAGGTGGAGATTCCATTGGTGAAACACCAACTCCTGGAGCCAGTAAAAGAAAATCACGTTGGGATGAAACACCAGCTAGTCAGATGGGTGGAAGCACTCCTGTTCTGACCCCTGGAAAGACACCAATTGGCACGCCAGCCATGAACATGGCTACCCCTACTCCAGCTGGATATGTTCCTATTCGAACTCCAGCTCGAAAGCTGACAGCAACTCCAACACCTTTGGGTGGTATGACAGGTTTCCACATGCAAACTGAAGATAGAACTATGAAAAGTGTTAATGACCAACCATCTGGAAATCTTCCATTTTTAAAACCTGATGATATTCAGTACTTTGATAAACTTTTGGTTGATGTTGATGAATCAACACTTAGTCCAGAAGAGCAAAAAGAGAGAAAAATAATGAAGTTGCTTTTAAAAATTAAGAATGGAACACCTCCAATGAGAAAAGCTGCATTGCGTCAGATTACTGATAAAGCTCGGGAATTTGGAGCTGGTCCTTTGTTTAATCAGATTCTTCCTCTGCTGATGTCGCCTACACTTGAGGATCAAGAGCGTCATTTGCTTGTAAAAGTTATTGATAGAATATTATACAAACTTGATGACTTAGTTCGACCATATGTGCACAAGATTCTAGTGGTCATTGAACCATTGTTGATTGATGAGGATTACTATGCTAGAGTGGAAGGCCGAGAGATTATTTCTAATTTGGCAAAGGCTGCTGGTCTGGCTACTATGATCTCTACCATGAGACCTGATATAGATAACATGGATGAGTATGTCCGTAACACAACAGCTAGAGCTTTTGCTGTGGTAGCCTCTGCCCTGGGCATTCCTTCATTATTGCCTTTCTTAAAAGCTGTGTGCAAAAGCAAGAAGTCCTGGCAAGCAAGACACACTGGTATAAAAATTGTACAGCAAATAGCTATTCTCATGGGCTGTGCCATCTTGCCACATCTCAGAAGTTTAGTTGAAATCATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATTAGTGCTTTGGCCATTGCTGCCTTGGCTGAAGCAGCAACTCCTTATGGTATCGAATCTTTTGATTCTGTGTTAAAGCCTCTATGGAAGGGTATCCGCCAACACAGAGGAAAGGGTCTGGCCGCTTTCTTAAAGGCTATTGGGTATCTTATTCCTCTCATGGATGCAGAATATGCCAACTACTATACTAGAGAAGTGATGTTAATTCTTATTCGAGAATTCCAATCTCCTGATGAAGAAATGAAGAAAATTGTGCTGAAGGTGGTAAAGCAGTGTTGTGGAACAGATGGTGTAGAAGCAAACTACATTAAAACAGAGATCCTTCCTCCTTTTTTTAAACACTTCTGGCAACACAGAATGGCTTTGGATAGAAGAAATTACCGGCAGTTAGTTGATACTACTGTGGAGTTGGCAAACAAAGTAGGTGCAGCAGAAATTATATCCAGGATTGTGGATGATCTGAAAGATGAAGCTGAACAGTACAGAAAAATGGTGATGGAGACAATTGAGAAAATTATGGGCAACTTGGGAGCAGCAGATATTGATCATAAACTTGAAGAACAGCTGATTGATGGTATTCTTTATGCTTTTCAAGAACAGACTACAGAGGACTCAGTAATGTTGAACGGCTTTGGCACAGTGGTCAACGCTCTTGGCAAACGAGTCAAACCGTACTTGCCTCAGATCTGTGGTACAGTTTTGTGGCGTTTAAATAACAAATCAGCAAAAGTTAGGCAACAGGCAGCTGACTTGATCTCTCGAACGGCTGTTGTCATGAAGACTTGTCAAGAGGAAAAATTGATGGGGCACTTGGGTGTTGTTTTGTATGAGTATTTGGGCGAAGAGTACCCTGAAGTATTGGGCAGCATTCTTGGAGCACTGAAGGCCATTGTAAATGTAATAGGTATGCATAAGATGACTCCACCAATTAAAGATCTGCTGCCTAGACTCACCCCCATCTTAAAGAATAGGCATGAAAAAGTACAAGAGAATTGTATTGATCTTGTTGGACGTATTGCTGATAGGGGAGCTGAATATGTGTCTGCAAGAGAATGGATGAGGATTTGCTTTGAGCTTTTAGAGCTCTTAAAAGCTCACAAAAAAGCTATTCGTAGAGCCACAGTCAACACATTTGGTTATATTGCAAAGGCCATTGGCCCTCATGATGTATTGGCTACACTTTTAAACAACCTCAAAGTTCAGGAAAGGCAGAACAGAGTTTGTACCACTGTAGCAATAGCTATTGTTGCTGAAACATGTTCACCCTTCACAGTACTACCTGCCTTAATGAATGAATACAGAGTTCCTGAACTGAATGTTCAAAATGGAGTGTTAAAATCACTTTCCTTCTTGTTTGAATATATTGGTGAAATGGGAAAGGACTACATTTATGCTGTAACACCACTCCTTGAAGATGCTTTAATGGATAGGGACCTTGTACACAGACAGACGGCTAGTGCAGTGGTGCAACACATGTCACTTGGGGTTTATGGATTTGGTTGTGAAGATTCACTGAATCACTTGTTGAACTATGTATGGCCCAATGTGTTTGAGACATCTCCCCATGTAATTCAGGCAGTTATGGGGGCCCTGGAGGGTCTGAGAGTTGCTATTGGACCATGTAGAATGCTGCAGTATTGTTTACAGGGTTTGTTTCACCCAGCCCGGAAAGTCAGAGATGTGTATTGGAAAATTTACAACTCCATCTACATTGGTTCACAGGATGCTCTCATAGCACATTACCCAAGAATCTACAATGATGATAAGAACACCTATATTCGTTATGAACTTGACTATATCTTGTAA

Related Sequences

bmy_04439T0 SequenceType object (3)

Length: 1259 aa      View alignments
>bmy_04439T0
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL*