Sequence detailsbmy_04535 (Coding sequence)

Part of scaffold_157 (SequenceType object (1))

For more information consult the page for scaffold_157 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

KDM1AENSTTRG00000007737 (Bottlenosed dolphin)

Gene Details

lysine (K)-specific demethylase 1A

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007320, Bottlenosed dolphin)

Protein Percentage 93.09%
cDNA percentage 92.49%
Ka/Ks Ratio 0.10394 (Ka = 0.0037, Ks = 0.0358)

KDM1AENSBTAG00000009500 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000012501, Cow)

Protein Percentage 99.55%
cDNA percentage 95.4%
Ka/Ks Ratio 0.0219 (Ka = 0.0036, Ks = 0.1664)

KDM1A (Minke Whale)

Gene Details

lysine (K)-specific demethylase 1A

External Links

Gene match (Identifier: BACU005762, Minke Whale)

Protein Percentage 99.55%
cDNA percentage 99.1%
Ka/Ks Ratio 0.13941 (Ka = 0.0034, Ks = 0.0246)

Additional orthologs identified in other species via the OPTIC pipeline.

KDM1A (Human)   Kdm1a (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2082 bp    Location:683183..722323   Strand:+
Raw sequence 
>bmy_04535
ACAGGGCAAGCAGGAGGACTTCAAGACGACAGTTCTGGAGGGTATGGAGACGGCCAAGCATCAGGTGTGGAGGGTGCAGCTTTCCAGAGTAGACTTCCTCATGACCGGATGACTTCTCAAGAAGCAGCCTGTTTTCCAGATATCATCAGTGGACCACAGCAGACCCAGAAGGTTTTTCTGTTCATTAGAAACCGCACATTGCAGTTGTGGTTGGATAATCCAAAGATTCAGCTGACCTTTGAGGCTACTCTCCAACAATTAGAAGCGCCTTACAACAGTGATACTGTGCTTGTCCACCGAGTTCACAGTTATTTAGAGCGTCACGGTCTTATCAACTTCGGCATCTATAAGAGGATAAAGCCCCTCCCAACTAAAAAGACGGGAAAGGTAATCATTATAGGCTCTGGGGTCTCGGGCTTGGCAGCAGCTCGTCAGTTACAAAGTTTTGGAATGGATGTCACACTCCTGGAAGCCAGGTTTTTTCTAGGAGGGAATCCCATGGCTGTGGTTAGCAAGCAAGTAAATATGGAACTGGCCAAGATCAAGCAAAAATGCCCACTTTATGAAGCTAATGGACAAGCTGTTCCTAAAGAGAAAGATGAAATGGTAGAGCAAGAGTTTAACCGGTTGCTAGAAGCTACGTCTTACCTTAGTCATCAACTAGACTTCAATGTCCTCAACAATAAGCCTGTGTCCCTTGGCCAGGCATTGGAAGTTGTCATTCAGTTACAAGAAAAGCATGTCAAAGATGAGCAGATTGAACATTGGAAGAAGATAGTGAAAACTCAGGAGGAACTGAAAGAACTTCTTAATAAGATGGTAAATTTAAAAGAGAAAATTAAAGAACTCCATCAGCAATACAAAGAAGCATCTGAAGTCAAGCCACCCAGAGATATCACTGCTGAGTTCTTAGTGAAAAGCAAACACAGGGATCTAACTGCCTTATGCAAGGAATATGATGAATTAGCTGAAACACAAGGAAAGCTAGAAGAAAAACTTCAAGAATTGGAAGCCAATCCCCCAAGTGATGTGTATCTCTCGTCAAGAGACAGACAAATACTTGACTGGCATTTTGCAAATCTTGAATTTGCTAATGCCACACCTCTCTCTACACTTTCCCTTAAACATTGGGATCAGGATGATGACTTTGAGTTTACTGGCAGCCACCTGACAGTGAGGAATGGCTACTCATGTGTGCCTGTGGCTTTAGCAGAAGGCCTGGACATTAAACTGAATACAGCAGTTCGGCAGGTTCGCTACACAGCTTCAGGTACGTCTTTACTGGGCTCCAGTGGGACCCACCCCTTGTATTTCACCATCTGCATCTTGGTCTTTGGCTTTTCCTATTCAGGATGTGAAGTGATAGCTGTGAATACCCGCTCCACGAGCCAGACGTTTATTTATAAGTGTGATGCAGTTCTCTGTACCCTTCCCTTGGGTGTGTTGAAGCAGCAGCCACCAGCTGTTCAGTTTGTGCCRCCTCTTCCTGAGTGGAAAACATCTGCAGTCCAAAGGATGGGATTTGGCAACCTTAACAAGGTCGTGTTGTGTTTTGACCGGGTATTCTGGGATCCAAGTGTCAATTTGTTCGGACATGTTGGCAGTACGACTGCCAGTAGGGCTCCAATACTATTGGCACTAGTGGCAGGAGAAGCTGCTGGCATCATGGAAAACATAAGTGATGATGTGATTGTTGGCCGATGCCTGGCCATTCTCAAAGGGATTTTTGGTAGCAGTGCAGTGCCCCAGCCCAAGGAAACTGTGGTGTCTCGCTGGCGTGCTGATCCCTGGGCCCGGGGCTCCTATTCCTATGTAGCCGCAGGATCATCTGGAAATGACTATGACTTAATGGCTCAGCCAATCACTCCTGGCCCCTCAATTCCAGGTGCCCCACAGCCTATTCCACGACTCTTCTTTGCTGGAGAACATACAATCCGTAACTACCCAGCCACGGTCCATGGTGCCCTGCTGAGTGGGCTGAGAGAAGCAGGAAGGATTGCAGACCAGTTCTTGGGGGCCATGTATACCCTGCCTCGCCAGGCCACACCAGGCGTCCCTGCACAGCAGTCCCCGAGCATGTGA

Related Sequences

bmy_04535T0 SequenceType object (3)

Length: 694 aa      View alignments
>bmy_04535T0
TGQAGGLQDDSSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARFFLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGTSLLGSSGTHPLYFTICILVFGFSYSGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM*