Part of scaffold_157 (Scaffold)

For more information consult the page for scaffold_157 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HMGCL ENSTTRG00000016135 (Bottlenosed dolphin)

Gene Details

3-hydroxymethyl-3-methylglutaryl-CoA lyase

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015291, Bottlenosed dolphin)

Protein Percentage 97.23%
cDNA percentage 97.85%
Ka/Ks Ratio 0.31259 (Ka = 0.0123, Ks = 0.0392)

HMGCL ENSBTAG00000021832 (Cow)

Gene Details

Hydroxymethylglutaryl-CoA lyase, mitochondrial

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000029103, Cow)

Protein Percentage 90.46%
cDNA percentage 92.31%
Ka/Ks Ratio 0.23519 (Ka = 0.0446, Ks = 0.1894)

HMGCL  (Minke Whale)

Gene Details

3-hydroxymethyl-3-methylglutaryl-CoA lyase

External Links

Gene match (Identifier: BACU005774, Minke Whale)

Protein Percentage 98.59%
cDNA percentage 98.59%
Ka/Ks Ratio 0.27783 (Ka = 0.0085, Ks = 0.0305)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 978 bp    Location:1348669..1330876   Strand:-
>bmy_04553
ATGGCGACAGGGAAGAAGGCGCTCCTGCGGAGACTGGTGGGCTTGGCGTCCCTCCGGGCTGTTAGCACCTCATCTGTGGGTACTTTCCCAAAGCGAGTGAAAATTGTGGAAGTTGGTCCCCGAGACGGACTACAAAATGAAAAGAATATTATACCTACTCCAATGAAAATCAAACTGATAGACATGCTTTCCGAAGCAGGACTCCCTGTTATAGAAGCCACCAGCTTTGTGTCTCCCAAATGGGTTCCCCAGATGGCTGACCACGCTGAAGTCATGAAGGGCATCCAGAAATTTCCTGGCATCAGCTACCCAGTGCTGACCCCAAATTTCAAAGGCTTCCAGGCAGCGGTTGCTGCCGGAGCCAAGGAAGTGGCTGTCTTTGGAGCTGCCTCCGAGCTCTTCAGCAAGAGGAACGTCAACTGCTCCATAGATGAGAGCGTGCGGCGGTTTGACGAAATCCTGAAGGCAGCTCGGGCGGCCAGTATCCCTGTGCGGGGGTACGTCTCCTGTGTGCTTGGATGCCCCTACGAAGGGAAGATCTCCCCGGCTAAAGTAGCTGAGGTCGCCAAGAAGATGTACTCAGTGGGCTGCTATGAGATCTCTCTGGGGGACACCATTGGCGTGGGCACTCCCGGGACCATGAAGGATATGCTGTCCGCTGTCATGCATGAGGTGCCAGTGGCTGCCCTGGCTGTCCACTGCCATGACACCTATGGCCAGGCCCTGGCCAACACCTTGATGGCCCTGCAGATGGGAGTGAGCGTCGTGGACTCTTCTGTGGCGGGACTTGGAGGCTGTCCCTATGCACAYGGAGCATCGGGAAACTTGGCCACCGAGGACCTGGTCTACATGCTGGCCGGCTTGGGCRTTCACACGGGTGTGAACCTCCAGAAGCTCCTGGAAGCTGGGGCCTTTATCTGTCAAGCCCTGAACAGAAGAACCAGCTCCAAAGTGGCTCAGGCCACCTGTAAACTGTGA

Related Sequences

bmy_04553T0 Protein

Length: 326 aa      View alignments
>bmy_04553T0
MATGKKALLRRLVGLASLRAVSTSSVGTFPKRVKIVEVGPRDGLQNEKNIIPTPMKIKLIDMLSEAGLPVIEATSFVSPKWVPQMADHAEVMKGIQKFPGISYPVLTPNFKGFQAAVAAGAKEVAVFGAASELFSKRNVNCSIDESVRRFDEILKAARAASIPVRGYVSCVLGCPYEGKISPAKVAEVAKKMYSVGCYEISLGDTIGVGTPGTMKDMLSAVMHEVPVAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAHGASGNLATEDLVYMLAGLGXHTGVNLQKLLEAGAFICQALNRRTSSKVAQATCKL*