Part of scaffold_155 (Scaffold)

For more information consult the page for scaffold_155 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LUM ENSTTRG00000001339 (Bottlenosed dolphin)

Gene Details

lumican

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001258, Bottlenosed dolphin)

Protein Percentage 97.94%
cDNA percentage 98.33%
Ka/Ks Ratio 0.34147 (Ka = 0.0101, Ks = 0.0297)

LUM ENSBTAG00000001745 (Cow)

Gene Details

Lumican

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002279, Cow)

Protein Percentage 94.41%
cDNA percentage 92.94%
Ka/Ks Ratio 0.11301 (Ka = 0.0262, Ks = 0.2321)

LUM  (Minke Whale)

Gene Details

lumican

External Links

Gene match (Identifier: BACU000984, Minke Whale)

Protein Percentage 89.32%
cDNA percentage 90.9%
Ka/Ks Ratio 0.44115 (Ka = 0.0775, Ks = 0.1757)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1167 bp    Location:496493..453627   Strand:-
>bmy_04651
ATGGAAGACTTCACTGAGCAGTACAGTACCTTGAAAAATATTACAGTACAGTACCTTGAAAAGTACAGTAGTACAGTACAACAGCTGGCATACAGGGACATCTTTGAAAGTTCACAACTTGAAGGATTCAAAGCATTTGCCAAAATGAATCTAGGTATGTTTCCTCTCCTCTTGGCATTAATTGGCTGTGCCAGCGGCAGCTACTACTATGAGGATTATGATTTCCCCCTATCGATTTATGGGAGATCATCACCAAACTGTGCACCAGAATGTAACTGCCCCGAAAGCTACCCAACGGCCATGTACTGCGATGAGCTGAAATTGAAAAGTGTGCCAATGGTGCCTCTTGGAATCAAGTACCTTTACCTTAGGAATAACCAGATTGACCATATTGATGATAAGGCCTTTGAAAACGTAACTGATCTGCAGTGGCTCATTCTAGATCATAACCTTCTAGAAAATTCCAAGATAAAAGGAAAAGTTTTCTCTAAACTGAAACAACTGAAGAAGCTGCATATAAATCACAACAATCTGACAGAATCTGTGGGCCCACTTCCCAAATCTCTGGTGGACCTGCAGCTCACTAACAACAAGATCTCGAAGCTTGGCTCCTTTGACGGACTGGTTAACCTGACATTTATCCACCTTCARCACAATCAGCTGAAAGAGGATGCTGTTTCAGCTGCTTTTAAAGGTCTTAAGTCACTTGAATACCTTGACTTGAGCTTCAATCAGATGACCAAAATGCCTTCTGGTCTCCCAGTATCTCTTCTAACTCTCTACTTAGACAACAATAAGATCAGCAACATCCCTGATGAGTATTTCAAGCGTTTTAATGGATTGCAGTATCTGCGTTTGTCTCATAATGAACTTGCTGATAGTGGAATACCTGGAAATTCTTTTAATGTGTCATCCTTGCTGGAGCTGGACCTCTCCTATAATAAACTTAAAAACATACCGACTGTCAATGAAAACCTTGAAAACTATTACCTGGAGGTCAATGAACTTGAAAAGTTTGAAGTAAAGAGCTTCTGTAAGATCCTGGGACCATTATCCTACTCCAAGATCAAACATTTGCGTTTGGATGGCAATCGCATCACCCAAACCAGTCTGCCACCTGATATGTATGAATGTCTACGTGTAGCAAATGAGATCACCGTTAATTGA

Related Sequences

bmy_04651T0 Protein

Length: 389 aa      View alignments
>bmy_04651T0
MEDFTEQYSTLKNITVQYLEKYSSTVQQLAYRDIFESSQLEGFKAFAKMNLGMFPLLLALIGCASGSYYYEDYDFPLSIYGRSSPNCAPECNCPESYPTAMYCDELKLKSVPMVPLGIKYLYLRNNQIDHIDDKAFENVTDLQWLILDHNLLENSKIKGKVFSKLKQLKKLHINHNNLTESVGPLPKSLVDLQLTNNKISKLGSFDGLVNLTFIHLQHNQLKEDAVSAAFKGLKSLEYLDLSFNQMTKMPSGLPVSLLTLYLDNNKISNIPDEYFKRFNGLQYLRLSHNELADSGIPGNSFNVSSLLELDLSYNKLKNIPTVNENLENYYLEVNELEKFEVKSFCKILGPLSYSKIKHLRLDGNRITQTSLPPDMYECLRVANEITVN*