Sequence detailsbmy_04689 (Coding sequence)

Part of scaffold_156 (SequenceType object (1))

For more information consult the page for scaffold_156 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TARBP2ENSTTRG00000017177 (Bottlenosed dolphin)

Gene Details

TAR (HIV-1) RNA binding protein 2

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000016280, Bottlenosed dolphin)

Protein Percentage 94.26%
cDNA percentage 95.08%
Ka/Ks Ratio 0.32625 (Ka = 0.0349, Ks = 0.1071)

TARBP2ENSBTAG00000000435 (Cow)

Gene Details

RISC-loading complex subunit TARBP2

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000000558, Cow)

Protein Percentage 94.81%
cDNA percentage 93.44%
Ka/Ks Ratio 0.18046 (Ka = 0.0339, Ks = 0.1876)

TARBP2 (Minke Whale)

Gene Details

TAR (HIV-1) RNA binding protein 2

External Links

Gene match (Identifier: BACU008080, Minke Whale)

Protein Percentage 95.36%
cDNA percentage 96.45%
Ka/Ks Ratio 0.53423 (Ka = 0.0306, Ks = 0.0573)

Additional orthologs identified in other species via the OPTIC pipeline.

TARBP2 (Human)   Tarbp2 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1116 bp    Location:767441..771652   Strand:+
Raw sequence 
>bmy_04689
ATGGCAGTGCTTGGCCAGGTGGGTGCAGAGAGGGGAGGTGTGATGAGGGTCTGTGCCCCTCCCCCCAGTATAGAGCAAATGCTGGCAGCCAACCCGGGCAAGACCCCGATCAGCCTTCTGCAGGAGTATGGGACCAGAATAGGGAAGACGCCCGTGTACGACCTTCTCAAAGCCGAGGGCCAAGCCCACCAGCCTAATTTCACCTTCCGGGTCACCGTTGGCGACACCAGCTGCACTGGTCAGGGCCCCAGCAAGAAGGCAGCCAAGCACAAGGCAGCCGAGGTGGCCCTCAAACACCTCAAAGGGGGGAGCATGCTGGAGCCGGCCCTGGAGGACAGCAGTTCTTTTTCTCCCCTAGACTCTTCACTGCCTGAGGACGTGCCGGTTTTTACAGCTGCAGCGGCTGCTACTCCTGTTCCATCTGCTGTCCCAACCAGGAGCCCCCCCATGGAGGTGCAGCCCCCTGTCTCCCCTCAGCAGTCTGAGTGCAACCCCGTTGGTGCTTTGCAGGAGCTGGTGGTGCAGAAAGGCTGGCGGTTGCCTGAGTACACAGTGACCCAGGAGTCTGGGCCAGCCCACCGCAAAGAGTTTACCATGACCTGCCGGGTGGAGCGTTTCATTGAGATTGGCAGCGGCACTTCCAAAAAGCTGGCAAAGCGTAATGCAGCGGCCAAAATGCTGCTTCGAGTGCACACGGTGCCTCTGGATGCCCGGGAGGGGAATGAGGCAGAGCCTGATGACGATCACTTTTCCATTGGTGTGGGCTCCCGTCTAGATGGACTTCGGAACCGGGGCCCAGGCTGCACCTGGGATTCTCTGCGAAATTCGGTGGGAGAGAAGATCCTGTCCCTCCGCAGCTGCTCCGCGGGCTCCTTGGGCGCTCTGGGCCCTGCTTGCTGCAGTGTCCTCAGTGAGCTCTCTGAGGAGCAGGCCTTCCATGTCAGCTACCTGGATATTGAGGAGTTGAGCCTCAGTGGGCTCTGCCAGTGCCTGGTGGAGCTGTCCACACAGCCGGCCACCGTGTGTCACGGCTCTGCATCTACCAGGGAGGCAGCCCGAGGCGAGGCTGCGCGCCGTGCCCTGCAGTACCTCAAGATCATGGCGGGCAGCAAATAA

Related Sequences

bmy_04689T0 SequenceType object (3)

Length: 372 aa      View alignments
>bmy_04689T0
MAVLGQVGAERGGVMRVCAPPPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDVPVFTAAAAATPVPSAVPTRSPPMEVQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDAREGNEAEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSAGSLGALGPACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSASTREAARGEAARRALQYLKIMAGSK*