Part of scaffold_156 (Scaffold)

For more information consult the page for scaffold_156 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

BT.30875 ENSBTAG00000006879 (Cow)

Gene Details

homeobox protein Hox-C11

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000009028, Cow)

Protein Percentage 98.41%
cDNA percentage 98.01%
Ka/Ks Ratio 0.0738 (Ka = 0.0066, Ks = 0.0889)

HOXC11  (Minke Whale)

Gene Details

homeobox C11

External Links

Gene match (Identifier: BACU008085, Minke Whale)

Protein Percentage 76.89%
cDNA percentage 80.74%
Ka/Ks Ratio 0.35716 (Ka = 0.1862, Ks = 0.5215)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 906 bp    Location:1172078..1183812   Strand:+
>bmy_04698
ATGGCCCAGCCCAACGGGCTGTGGGACAGTGGCAAATCGGAACCAGAGCGAGCCCAGTGCAGCTCCTGCTCCAGCACCAGCACTGAGGATCACCGAGGATCTGGTATCAGGTCCAAAACCTCCATCTGGAGCCGGCAGGAGAAGAGAACGATGTTTAACTCGGTCAACCTGGGCAACTTCTGCTCGCCGTCGCGCAAGGAGAGGGGCGCCGATTTCGGCGAGCGAGGGAGCTGCGCCTCCAACCTCTATCTGCCCAGTTGCACTTACTACGTGCCCGAGTTCTCCACGGTCTCCTCCTTCCTGCCCCAGGCCCCCTCTCGTCAGATCTCCTATCCCTACCCGGCCCAAGTGCCCCCGGTCCGGGAGGTCTCCTACGGCCTGGAGCCCTCCGGCAAGTGGCACCACCGGAACAGCTATTCCTCTTGCTATGCGGCGGCCGACGAGCTCATGCACCGGGAGTGCCTGCCTCCTTCCACCGTCACCGAGATCCTCATGAAAAACGAAGGCTCCTACGGCGGCCACCACCACCCCAGCGCCCCGCACGCCGCCCCCGCCGGCTTCTACTCCTCAGTCAACAAGAACAGCGTCCTGCCCCAAGCCTTCGACCGTTTCTTCGACAACGCCTACTGCGGTGGCGGCGACGCGTCCGCCGAGCCCCCCTGCCCGGGCAAGGACGCCCCCCGCACCCGCAAGAAGCGCTGCCCTTATTCGAAATTCCAGATCCGGGAACTGGAGCGAGAGTTTTTCTTCAACGTGTATATCAACAAAGAGAAGCGGCTGCAGCTGTCCCGGATGCTGAACCTGACGGACCGACAAGTGAAAATTTGGTTTCAGAACAGAAGGATGAAAGAAAAAAAACTAAGCAGAGACCGGCTGCAGTATTTCTCGGGAAATCCTCTGCTGTAA

Related Sequences

bmy_04698T0 Protein

Length: 302 aa      View alignments
>bmy_04698T0
MAQPNGLWDSGKSEPERAQCSSCSSTSTEDHRGSGIRSKTSIWSRQEKRTMFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYVPEFSTVSSFLPQAPSRQISYPYPAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHAAPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDASAEPPCPGKDAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL*