Part of scaffold_156 (Scaffold)

For more information consult the page for scaffold_156 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HOXC4 ENSTTRG00000004529 (Bottlenosed dolphin)

Gene Details

homeobox C4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004258, Bottlenosed dolphin)

Protein Percentage 91.9%
cDNA percentage 94.2%
Ka/Ks Ratio 0.61599 (Ka = 0.0562, Ks = 0.0912)

HOXC4 ENSBTAG00000003304 (Cow)

Gene Details

homeobox protein Hox-C4

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000004277, Cow)

Protein Percentage 92.31%
cDNA percentage 94.2%
Ka/Ks Ratio 0.43841 (Ka = 0.0506, Ks = 0.1154)

HOXC4  (Minke Whale)

Gene Details

homeobox C4

External Links

Gene match (Identifier: BACU008092, Minke Whale)

Protein Percentage 93.47%
cDNA percentage 94.83%
Ka/Ks Ratio 0.34402 (Ka = 0.0403, Ks = 0.1171)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 744 bp    Location:1261561..1266018   Strand:+
>bmy_04706
ATGATCATGAGCTCGTATTTGATGGACTCTAACTACATCGATCCGAAATTTCCTCCATGCGAAGAATATTCGCAAAATAGCTACATCCCTGAACACAGTCCGGAATATTACGGCCGGACCAGGGAATCGGGATTCCAGCATCACCACCAGGAGCTGTACCCACCACCGCCTCCGCGCCCTAGCTACCCTGAGCGCCAGTATAGCTGCACCAGTCTCCAGGGGCCGGGCAATTCGCGAGGCCACGGCCCGGCCCAGGCGGGCCACCACCACCCCGAGAAATCACAGCCGCTCTGCGAGCCGGCGCCTCTCTCAGGCGCCTCCGCCTCCCCGTCCCCAGCCCCGCCAGCCTGCAGCCAGCCAGCCCCTGACCATCCCTCCAGCGCCGCCAGCAAGCAACCCATAGTCTACCCATGGATGAAAAAAATCCACGTTAGCACGGTGAACCCCAATTATAACGGAGGGGAACCCAAGCGCTCGAGGACAGCCTACACCCGGCAGCAAGTCCTGGAATTAGAGAAAGAGTTTCATTACAATCGCTACCTGACCCGAAGGAGAAGGATCGAGATCGCCCACTCGCTGTGCCTCTCTGAGAGGCAGATCAAAATCTGGTTCCAAAACCGTCGCATGAAATGGAAGAAGGACCACCGACTCCCCAACACCAAAGTCAGCGCCTCTGACCTCTACCCCACCCCCAACTCCGACCCTCCCAAGCCAGCCCTTGCTCAGCCCCTGGTCTCCAGATAG

Related Sequences

bmy_04706T0 Protein

Length: 248 aa      View alignments
>bmy_04706T0
MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQPLCEPAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVSASDLYPTPNSDPPKPALAQPLVSR*