Part of scaffold_163 (Scaffold)

For more information consult the page for scaffold_163 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VIM ENSTTRG00000000436 (Bottlenosed dolphin)

Gene Details

vimentin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000409, Bottlenosed dolphin)

Protein Percentage 77.75%
cDNA percentage 80.54%
Ka/Ks Ratio 0.41327 (Ka = 0.1925, Ks = 0.4659)

VIM ENSBTAG00000018463 (Cow)

Gene Details

Vimentin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024572, Cow)

Protein Percentage 76.88%
cDNA percentage 77.75%
Ka/Ks Ratio 0.25005 (Ka = 0.1943, Ks = 0.777)

VIM  (Minke Whale)

Gene Details

vimentin

External Links

Gene match (Identifier: BACU017213, Minke Whale)

Protein Percentage 77.46%
cDNA percentage 80.25%
Ka/Ks Ratio 0.35386 (Ka = 0.1894, Ks = 0.5352)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1098 bp    Location:915142..922358   Strand:+
>bmy_04747
GTGCGCTTCCTGGAGCAGCAGAACAAGATCCTGCTGGCCGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCGCGAGCTGCGCCGGCAGGCGGACCAGCTCACCAACGACAAAGCCCGCGTCGAGGTGGAGCGCGACAACCTGTCCGAGGACATCATGCGTCTCCGGGAGAAGTTGCAGGAGGAGATGCTTCAGAGGGAGGAAGCCGAGAGCACCCTGCAGTCTTTCAGACAGGATGTTGACAATGCTTCACTGGCACGTCTGGACCTGGAGCGTAAAGTGGAATCCTTGCAAGAAGAGATTGCCTTTTTGAAGAAACTACATGATGAGGAAATCCAGGAGCTGCAGGCCCAGATTCAAGAACAGCACGTCCAAATCGATATGGATGTTTCCAAGCCCGACCTCACGGCTGCCCTGCGTGACGTCCGCCAGCAGTACGAGAGCGTGGCCGCCAAAAACCTCCAGGAGGCTGAGGAATGGTACAAGTCCAAGGTGCGAAACGAGCGATTCGCTGACCTCTCCGAGGCTGCTAACCGCAACAACGATGCCCTGCGCCAGGCCAAGCAGGAGTCGAACGAGTACCGTCGGCAGGTGCAGTCCCTCACCTGCGAAGTGGACGCCCTCAAAGGGACCGTGAGTATCACAGCGCAAGGAGAGAGGGCCGATCACCAGCTTGGAGCCATTTCAGGTGGCCAAGCTCAGGGTGCTATCAGGAGAAAACTTTGTTCAAAGGGAGAAAAATTTACATTTTACTCCAAAGACGATGAGTCGTCAAGACAGATTCAAAAAGAACTTGGAGATCCCAAGAACGAGTCTCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTTGCCGTGGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAGGACGAGATTCAGAACATGAAGGAAGAGATGGCCCGTCACCTGCAAACCAATCTGGATTCACTCCCTCTGGTTGACACCCATTCAAAAAGGACGCTTCTGATTAAGACGGTTGAAACCAGAGACGGACAGGTTATCAACGAAACTTCCCAGCATCACGATGATCTGGAATAA

Related Sequences

bmy_04747T0 Protein

Length: 366 aa      View alignments
>bmy_04747T0
VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQADQLTNDKARVEVERDNLSEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKVRNERFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTVSITAQGERADHQLGAISGGQAQGAIRRKLCSKGEKFTFYSKDDESSRQIQKELGDPKNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLQTNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE*