Sequence detailsbmy_04807 (Coding sequence)

Part of scaffold_170 (SequenceType object (1))

For more information consult the page for scaffold_170 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HCFC2ENSTTRG00000004574 (Bottlenosed dolphin)

Gene Details

host cell factor C2

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004332, Bottlenosed dolphin)

Protein Percentage 99.77%
cDNA percentage 99.15%
Ka/Ks Ratio 0.03137 (Ka = 0.001, Ks = 0.0331)

HCFC2ENSBTAG00000020933 (Cow)

Gene Details

host cell factor 2

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000027882, Cow)

Protein Percentage 98.84%
cDNA percentage 97.21%
Ka/Ks Ratio 0.05349 (Ka = 0.0053, Ks = 0.1)

HCFC2 (Minke Whale)

Gene Details

host cell factor C2

External Links

Gene match (Identifier: BACU018920, Minke Whale)

Protein Percentage 99.04%
cDNA percentage 99.2%
Ka/Ks Ratio 0.20632 (Ka = 0.0031, Ks = 0.0151)

Additional orthologs identified in other species via the OPTIC pipeline.

HCFC2 (Human)   Hcfc2 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1293 bp    Location:1113253..1135112   Strand:+
Raw sequence 
>bmy_04807
ATGGCGGCTCCCAGCCTCCTCAACTGGAGGCGGGTTTCCTCCTTCACGGGGCCGGTCCCCCGCGCCCGGCACGGACACCGAGCGGTGGCCATCCGGGAGCTGATGATCATCTTTGGAGGGGGCAACGAGGGCATCGCCGACGAGCTGCACGTCTACAACACGGTTACAAATCAGTGGTTCCTGCCAGCTGTTAGAGGAGACATCCCTCCAGGCTGTGCTGCCCATGGATTTGTCTGTGATGGTACCAGAATATTAGTATTTGGGGGAATGGTTGAATACGGAAGATACAGCAATGAGTTATATGAGTTACAAGCAAGTCGTTGGTTATGGAAAAAAGTGAAACCGTATCCCCCGTCTTCTGGTTTACCTCCTTGTCCTCGGCTGGGACATAGCTTCTCTTTATATGGTAACAAATGCTATTTGTTTGGTGGCCTGGCAAATGAAAGTGAAGATTCAAACAATAATGTTCCCAGATATTTAAATGATTTCTATGAGTTGGAGCTACAGCATGGTTCTGGTGTTGTGGGTTGGAGCATTCCAGTGACTAAAGGGATTGTGCCTTCTCCAAGAGAATCCCACACAGCTGTTATATATTGCAGAAGAGATTCTGGAAGTCCTAAAATGTATGTTTTTGGTGGAATGTGTGGTGCTCGCCTTGATGACCTATGGCAGCTTGACTTAGAAACTATGTCATGGTCAAAACCAGAAACTAAAGGGACAGTGCCACTTCCACGAAGCCTTCATACAGCCAGTGTTATAGGAAATAAGATGTACATCTTTGGTGGATGGGTTCCACATAAGGGGGAAAATATTGAGACTTCACCTCATGATTGTGAATGGAGATGTACCAGTTCATTTTCTTACTTAAATCTTGATACAGCAGAATGGACCACCCTAGTATCAGATTCTCAAGAAGACAAAAAAAATTCAAGACCAAGACCAAGAGCTGGACACTGTGCTGTTGCAATTGGCACTCGATTGTATTTTTGGAGTGGAAGAGATGGCTACAAAAAAGCACTGAATAGTCAAGTTTGCTGCAAGGATCTTTGGTATCTTGATACTGAGAAACCACCGGCACCATCACAAGTACAACTGATCAAAGCCACTACCAACTCTTTTCATGTCAAATGGGATGAAGTGCCTACAGTTGAAGGCTATCTTTTGCAGTTGAATACAGACTTGCCGTACCAAGCTGTGTCATCAGATTCTTCAGCAACACCAAATATGCAAGGAGTCAGGATGGACCCACACAGACAAGGCAGTAATAGCATCATTCCTAACAGTGTAAGTTGA

Related Sequences

bmy_04807T0 SequenceType object (3)

Length: 431 aa      View alignments
>bmy_04807T0
MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWKKVKPYPPSSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTAVIYCRRDSGSPKMYVFGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENIETSPHDCEWRCTSSFSYLNLDTAEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVPTVEGYLLQLNTDLPYQAVSSDSSATPNMQGVRMDPHRQGSNSIIPNSVS*