Part of scaffold_166 (Scaffold)

For more information consult the page for scaffold_166 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RFX3 ENSTTRG00000003709 (Bottlenosed dolphin)

Gene Details

regulatory factor X, 3 (influences HLA class II expression)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003484, Bottlenosed dolphin)

Protein Percentage 55.13%
cDNA percentage 54.06%
Ka/Ks Ratio 0.01549 (Ka = 0.2984, Ks = 19.2683)

RFX3 ENSBTAG00000000819 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000001085, Cow)

Protein Percentage 59.46%
cDNA percentage 59.61%
Ka/Ks Ratio 0.01671 (Ka = 0.3308, Ks = 19.7982)

RFX3  (Minke Whale)

Gene Details

regulatory factor X, 3 (influences HLA class II expression)

External Links

Gene match (Identifier: BACU009463, Minke Whale)

Protein Percentage 59.18%
cDNA percentage 59.23%
Ka/Ks Ratio 0.0168 (Ka = 0.3345, Ks = 19.9112)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2859 bp    Location:522286..546075   Strand:+
>bmy_04839
ATGGCAACACAGGCGTACGTTACTGAGCTACAGGCAGCCCCGCAACCATCCCAGCCGCCACAGGCCCCTCCACAGGCCCAGCCCCAGCCACCGCCACCACCACCCTCAGCAGCACCCCAGCCCCCCCAGCCCCCCGCCACCACCGCCACCCCCCAGCCCCAGTATGTCACCGAGCTGCAGAGTCCGCAGCCTCAGGCACAGCCACCGGGCGGCCAGAAGCAGTACGTGACAGAGCTCCCGGCCGCCCCCACGCCCTCGCAGCCGGCCGGCACACCCGCCCCATCCCCGGCGTCCCAGCAGTACATCGTGGTCACCGTCTCCGAAGGTGCCATGCGGGCCAGCGAGACTGTGTCAGAGGCCAGCCCGGGCTCCACGGCCAGCCAGACCGGAGTCCCCACTCAGGTGGTACAGCAGGTGCAGGGCACCCAGCAGCGGCTGCTGGTCCAGACGAGCGTGCAGGCCAAGCCGGGCCACGTGTCACCCCTCCAGCTCACCAACATCCCGGTGCCCCAACAGCGTCTGGTGGTGCAGAGCACAGTCCCGGGCGGCAAGAGTGGCCAGGTCTCCCTGACGGTGCATGGCACGCAGCAGGTGCACTCACCTCCTGAGCGGTCGCCAGTGCAGGCCAATAGCTCCTCCAGCAAGACGGCTGGGGCCCCCACGGGCACGGTGCCTCAGCAGCTGCAAGTCCACGGCGTCCAGCAGAGTGTCCCCGTCACCCAAGAGAGGTCCGTGGTCCAGGCCACTCCACAAGTGCCCAAAGCTGGCCCCGTGCAGCAGCTCACAGTGCAAGGGCTCCAGCCGGTCCACGTGGCTCAAGAGGTGCAGCAGCTCCAGCAGGTGCCAGTCCCACATGTGTACTCCAGCCAAGTGCAGTATGTGGAGGGCAGTGATGCCAGCTACACGGCCAGCGCCATCCGCTCCAGCACCTACCCCTACCCCGAGACGCCGCTGTACACGCAGACGGCGGGCACCAGCTACTACGAGGCCGCGGGCACCGCTGCCCAGGTCAGCACACCTGCCACCTCCCAGGCGGTGGCCAGCAGTGGCTCTGTGCCCATGTACGTGTCCGGCAGCCAGGTCGTCGCCAGCTCCACCAGCAGTGGGAGTGGGGCCAGCAACAGCAGCGGCGGCGGCAGTGGCGGCGGGGGAGGCGGTGGCGGGGGCGGTGGCAGTGGCAGCAGCAGTGGCAGCGGAGCGGGCACCTACGTGATCCAAGGCGGCTACATGCTGGGCAGTGCCAGCCAGTCCTACTCCCACACCACCCGTGCCTCACCAGCCACTGTCCAGTGGCTCCTGGACAACTATGAGACAGCCGAGGGCGTGAGCCTGCCTCGGAGCACCCTCTACTGCCACTACCTGCTGCACTGCCAGGAGCAGAAGCTGGAGCCCGTCAACGCCGCCTCCTTCGGCAAGCTCATCCGCTCTTACCACTACTATGGCCTGCGCATCAAGGCCAGCTCACCCCTGCTGCGGCTGATGGAGGACCAGCAGCACATGGCCATGCGGGGCCAACCCTTCTCGCAAAAACAGAGGCTCAAACCCATCCAGAAGATGGAGGGCATGACCAACGGTGTGGCCGTGGGGCCACAGCAGGCCACTGGGCTGTCGGACATCAGCGCCCAGGTCCAGCAGTACCAGCAGTTTCTGGATGCCTCGAGGAGCCTCCCTGACTTCTCAGAGCTCGACCTCCAGGGCAAAGTGCTGCCCGAAGGCATCGGGCCTGGGGACATCAAGGCCTTCCAGGTCCTGTACCGGGAACACTGTGAGGCCATCGTCGATGTCATGGTGAACTTGCAGTTCACCCTGGTGGAGACGCTGTGGAAAACCTTCTGGAGGTACAACCTGAGCCAGCCCAGCGAGGCACCGCCACTGGCTGTGCATGATGAGGCCGAGAAGCGGCTGCCCAAGGCCAGCCTGGTGCTCCTCTCCAAGTTCGAGCCCGTGCTCCAGTGGACCAAGCACTGTGACAACGTGCTGTACCAGGGCCTGGTGGAGATCCTCATCCCCGACGTGCTGCGGCCCATCCCCAGTGCCTTGACCCAAGCGATCCGGAACTTTGCCAAGAGCCTGGAGAGCTGGCTCACCCACGCCATGGTGAACATACCTGAGGAGATGCTGCGGGTGAAGGTGGCAGCAGCCGGCGCCTTCGCGCAGACCCTGCGGCGCTACACGTCACTCAACCACCTGGCGCAGGCCGCCCGGGCTGTGCTGCAGAACACCGCGCAGATCAGCCAGATGCTCAGCGACCTCAACCGCGTGGACTTCGCCAACGTGCAGGAGCAGGCCTCGTGGGTGTGCCGCTGCGAGGACCGCGTGGTGCAGCGGCTGGAGCAGGACTTCAAAGTGACTCTGCAGCAGCAGAACTCACTGGAACAGTGGGCGGCCTGGCTGGACGGCGTCGTGAGCCAAGTGCTTAAGCCCTACCAGGGCAGCGCCGGCTTTCCCAAGGCCGCTAAGCTCTTCCTCCTCAAGTGGTCCTTCTACAGCTCCATGGTGATCCGGGACCTGACTCTGCGCAGCGCCGCCAGCTTCGGCTCCTTCCATCTCATACGGCTGCTCTACGATGAGTACATGTACTACTTGATCGAGCATCGCGTGGCCCAGGCCAAGGGCGAGACCCCCATTGCCGTCATGGGCGAGTTCGCCAACCTGGCCACCTCGCTGAACCCCCTGGACCCGGACAAAGACGAGGAGGAGGAAGAGGAGGAGGAAAGCGAGGACGAGCTGCCGCAGGACATCTCGCTCGCGGCCGGTGGCGAGTCGCCCGCGCTGGGCCCCGAGGCTCTGGAGCCACCGGCCAAGCTGGCGCGGACAGACGCACGCGGCCTCTTCGTGCAGGCGCTGCCCTCCAGCTAA

Related Sequences

bmy_04839T0 Protein

Length: 953 aa      View alignments
>bmy_04839T0
MATQAYVTELQAAPQPSQPPQAPPQAQPQPPPPPPSAAPQPPQPPATTATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAAPTPSQPAGTPAPSPASQQYIVVTVSEGAMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIPVPQQRLVVQSTVPGGKSGQVSLTVHGTQQVHSPPERSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQVPKAGPVQQLTVQGLQPVHVAQEVQQLQQVPVPHVYSSQVQYVEGSDASYTASAIRSSTYPYPETPLYTQTAGTSYYEAAGTAAQVSTPATSQAVASSGSVPMYVSGSQVVASSTSSGSGASNSSGGGSGGGGGGGGGGGSGSSSGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGPQQATGLSDISAQVQQYQQFLDASRSLPDFSELDLQGKVLPEGIGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQISQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPEALEPPAKLARTDARGLFVQALPSS*