Part of scaffold_166 (Scaffold)

For more information consult the page for scaffold_166 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NFIX ENSTTRG00000006368 (Bottlenosed dolphin)

Gene Details

nuclear factor I/X (CCAAT-binding transcription factor)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006023, Bottlenosed dolphin)

Protein Percentage 75.71%
cDNA percentage 78.93%
Ka/Ks Ratio 0.36745 (Ka = 0.2007, Ks = 0.5461)

NFIX ENSBTAG00000018229 (Cow)

Gene Details

Nuclear factor 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024262, Cow)

Protein Percentage 75.35%
cDNA percentage 79.28%
Ka/Ks Ratio 0.33531 (Ka = 0.1923, Ks = 0.5734)

NFIX  (Minke Whale)

Gene Details

nuclear factor I/X (CCAAT-binding transcription factor)

External Links

Gene match (Identifier: BACU003993, Minke Whale)

Protein Percentage 98.64%
cDNA percentage 98.79%
Ka/Ks Ratio 0.15549 (Ka = 0.0058, Ks = 0.0371)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 867 bp    Location:1281555..1276631   Strand:-
>bmy_04855
ATGCTCCCGGCTTGCCGCCTGCAGGATGAGTTCCACCCGTTCATCGAGGCGCTGCTGCCTCACGTCCGCGCCTTCTCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCACGAGAAGCGGATGTCGAAAGACGAGGAGCGGGCGGTGAAGGACGAGCTGCTGGGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCATCCCGGCTGCTGGCCAAGCTGCGCAAAGACATCCGGCCCGAGTTCCGAGAGGACTTTGTGCTGACCATCACGGGCAAGAAGCCCCCCTGCTGTGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTTCGCCAGGCCGACAAGGTGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGACGGGGAGCGGCTCTACAAGTCGCCCCAGTGCTCGAACCCCGGCCTGTGCGTGCAGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCTTACTTTGTCCACACTCCGGGCCAAATTTTTGACTGCTGCCAGCATGGGGCTGAGAACCTGATCTGGGCTGAACTGGTGGTGCCAGGTTTGATGACAAGCAAAGTTGACATGATGTATAAGAGCTTCGTAGTTTTTGCTGTCTGCTTCAGGACTTGGGGCTTTGCGGTGAGCACTGGTTTTCTGGTCCAAGGGAGGGCTCCACGTCTGCGTCCTTCCTCAGCAGTGGAAGGCATTACTTCGCCATGTCAGCCCTGCCAAGATGTGGCTGATGCCAGTGATGTCCCCCAAGCCTTTGCTGGATGCCTGGCCCGTCTGGTGGCTCTGGTGTGA

Related Sequences

bmy_04855T0 Protein

Length: 289 aa      View alignments
>bmy_04855T0
MLPACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPGQIFDCCQHGAENLIWAELVVPGLMTSKVDMMYKSFVVFAVCFRTWGFAVSTGFLVQGRAPRLRPSSAVEGITSPCQPCQDVADASDVPQAFAGCLARLVALV*