Part of scaffold_159 (Scaffold)

For more information consult the page for scaffold_159 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SP140 ENSTTRG00000009293 (Bottlenosed dolphin)

Gene Details

SP140 nuclear body protein

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008817, Bottlenosed dolphin)

Protein Percentage 71.11%
cDNA percentage 78.6%
Ka/Ks Ratio 1.16024 (Ka = 0.1671, Ks = 0.144)

BT.59240 ENSBTAG00000009664 (Cow)

Gene Details

nuclear body protein SP140

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000012738, Cow)

Protein Percentage 46.5%
cDNA percentage 62.92%
Ka/Ks Ratio 0.77042 (Ka = 0.5294, Ks = 0.6871)

SP140  (Minke Whale)

Gene Details

SP140 nuclear body protein

External Links

Gene match (Identifier: BACU010962, Minke Whale)

Protein Percentage 95.36%
cDNA percentage 97.12%
Ka/Ks Ratio 0.92397 (Ka = 0.0289, Ks = 0.0313)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1779 bp    Location:182220..242969   Strand:+
>bmy_04892
ATGATCACAGGGGACCAGAACCCAGAGGAGCAGAACCCAGAGGTGCAGTTTTTCTATGAGTTCATATTCAGGCTCTTCAAAGAAAATAAGGTGGAGATTGCAAGTGCAATAACAAAGCCGTTTCCTTTCCTCATGGGCCTCCGAGATCGGGGCTTCATCCCTGAGCAGATGTACAAGCATTTTCAAGAAGCTTGTGGAAATCTGGTCCCGGTGGAAAGAGTGGTGTATGATGCTCTCAGTGAACTGGAGAAGAAATTTGACAAGACAATTCTGGATGCCCTGTTCAGCAGAGTTAACCTGAAGGCCTATCCTGATTTACTTCAGATTTGCAGAAACTTCCAAAATGTGATTCATGAAAACTTCCATTACCAAACCGTTGGTGAAGGAGAGACAAAGGAGACATTCAACTTACAATTAAACCGTGAACAAGTGTCCTTGGAACAGTCACCTCTCCAAATGAACAATGTAATGAGGTTAGAAGATGTACCCAGCTTACTGCCATATGACAGACGAGTTTCCTGTGAGCACAAAGCTCTTCAAAGTACAAACGAAGGCAAGTCTGAAGAGATTCCCAAACTGCAAGCAGAGGACAACAATGCCTGTTGGGAGGTCTGTGACAAAGAAGAGCCCCAGGAAGCCTCGAGCTCCCCACCAAGATGTGAGTCAGTGTCCTGTGATCCTGAAGCTTCCCAAATGACCAACGAAGAAGAACCAGAGGAGCTGCCTAGTCAACCACTATGTGATGGAGAAGGAGCAGAGCTACCAACATTTGGAAATGAGAAGTGTTCCTGTGTTATGTGTTTCTCAAAAGATGTGCCAGGAGGTCCAGAAGGAAGTACTGAAAGTAAAGAAGGTAGTGACATGATGGATACTGTGGATCTTGGAAACAACTCTACTTTGGGAAAACTCAAGAGGAAAAGAAAAAAAAAGAAAGGGCATTCCTGGACAAGAGTAAAAATGAAATATCAGAGAAACATACATCAAAAAGACAACAGCAACGCTGCTGGCCAACTGGCCTCGAGTGGAAAGAAGGTGAAAAGGCATCTGCAGGACCCTGTCAAAATCAGGCGGAGAAGGAGAGGCAGACAGAGACTCCACTTAACTCATAGTGGCAGAGCCCTACAGAAAAAAGTTAAGTCAAGAGGGCAAAGAAAGCACAGATATGAAAAAGTGGATTTTCACTCTCAGATACTTCCTGTGACCTGTGGTAAGGTGAAGGGGATGTTACATAAGAAGAAATTGGAAGAAGGAGTCTTGGTGAAGTGTATACAGAGTGAGAATGGAGACTGGTTCACCCCCAGGGAATTTGAAATCAGAGGAGGCCACGAAAGATCCAAGAACTGGAAGATAAGCGTTCGCTGTAGTGGGATGCCCCTACGTTGGCTGATCGAGAAAGGAGTACCGAAGTCTCACGACAATACTTTAGATAACCTTTGTGAGCCCGTGGAGTTGCACCTTCTGCAGGATGAAGGAGTCTTCTGGAAGCCAGCAGTGTCTCGGGGAATCTGGGGTCCTGGCAAGGCAGATGCAGCCCGAGGAGCAGTTGGTGAGTCGGATGGGAACCCCAAGTCTTCCCCTTTCCCCTCACATAAATGTGAGTTCCTCCTCTTGAAGGTCTATTGTCATACAGAGAGCACCTTTTTTGCGAAGATTCCATACTACTATTATATTAAAGAGGCTTCTGAAAACCTAAAGGAACCCATGTGGTTGGACAAGATCAAGAAGAGGCTGAATGAGCAGGGTTACTCCCACGTGGAGGGTTCAACGACTTTGGCCTAA

Related Sequences

bmy_04892T0 Protein

Length: 593 aa      View alignments
>bmy_04892T0
MITGDQNPEEQNPEVQFFYEFIFRLFKENKVEIASAITKPFPFLMGLRDRGFIPEQMYKHFQEACGNLVPVERVVYDALSELEKKFDKTILDALFSRVNLKAYPDLLQICRNFQNVIHENFHYQTVGEGETKETFNLQLNREQVSLEQSPLQMNNVMRLEDVPSLLPYDRRVSCEHKALQSTNEGKSEEIPKLQAEDNNACWEVCDKEEPQEASSSPPRCESVSCDPEASQMTNEEEPEELPSQPLCDGEGAELPTFGNEKCSCVMCFSKDVPGGPEGSTESKEGSDMMDTVDLGNNSTLGKLKRKRKKKKGHSWTRVKMKYQRNIHQKDNSNAAGQLASSGKKVKRHLQDPVKIRRRRRGRQRLHLTHSGRALQKKVKSRGQRKHRYEKVDFHSQILPVTCGKVKGMLHKKKLEEGVLVKCIQSENGDWFTPREFEIRGGHERSKNWKISVRCSGMPLRWLIEKGVPKSHDNTLDNLCEPVELHLLQDEGVFWKPAVSRGIWGPGKADAARGAVGESDGNPKSSPFPSHKCEFLLLKVYCHTESTFFAKIPYYYYIKEASENLKEPMWLDKIKKRLNEQGYSHVEGSTTLA*