Part of scaffold_159 (Scaffold)

For more information consult the page for scaffold_159 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PSMD1 ENSTTRG00000016093 (Bottlenosed dolphin)

Gene Details

proteasome (prosome, macropain) 26S subunit, non-ATPase, 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015252, Bottlenosed dolphin)

Protein Percentage 99.17%
cDNA percentage 98.84%
Ka/Ks Ratio 0.13441 (Ka = 0.005, Ks = 0.0373)

PSMD1 ENSBTAG00000005119 (Cow)

Gene Details

26S proteasome non-ATPase regulatory subunit 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006754, Cow)

Protein Percentage 98.68%
cDNA percentage 96.0%
Ka/Ks Ratio 0.04797 (Ka = 0.0075, Ks = 0.1556)

PSMD1  (Minke Whale)

Gene Details

proteasome (prosome, macropain) 26S subunit, non-ATPase, 1

External Links

Gene match (Identifier: BACU010970, Minke Whale)

Protein Percentage 98.95%
cDNA percentage 98.88%
Ka/Ks Ratio 0.21043 (Ka = 0.0064, Ks = 0.0302)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1827 bp    Location:690883..711299   Strand:+
>bmy_04901
GGAATAATTTCTCTTCTGGATGAAGAAGAACCACAGCTTAAGGAATTTGCACTACACAAATTGAATGCAGTTGTCAATGACTTCTGGGCAGAAATTTCTGAGTCTGTAGACAAAATAGAAGTTTTGTATGAAGATGAAGGTTTCCGGAGTCGGCAGTTTGCAGCCTTAGTGGCATCTAAAGTATTTTATCACCTGGGGGCTTTTGAGGAGTCTCTGAATTATGCACTTGGAGCAGGTGACCTCTTCAATGTCAATGATAACTCTGAATATGTGGAGACTATTATAGCAAAGTGCATTGATCACTACACCAAACAATGTGTGGAAAATGCAGATTTGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATTGTGAATAAAATGTTTCAACGATGTCTAGATGATCACAAGTATAAGCAAGCTATCGGCATTGCTCTGGAGACACGAAGACTGGACGTCTTTGAGAAGACTATACTTGAGTCGAATGATGTCCCAGGAATGCTGGCTTATAGCCTCAAGCTCTGCATGTCTTTAATGCAGAATAAACAGTTTCGGAATAAAGTACTGAGAGTTCTAGTTAAAATCTACATGAACTTGGAGAAACCTGATTTCATCAATGTTTGTCAGTGCTTAATTTTCTTAGATGATCCTCAGGCCGTGAGTGATATCTTAGAAAAATTGGTAAAGGAAGACAACCTCCTGATGGCTTATCAGATTTGTTTTGATTTGTATGAAAGCGCTAGCCAGCAGTTTTTGTCATCTGTAATCCAGAATCTTCGAACTGTTGGCACCCCTATTGCTTCTGTGCCTGGATCCACCAATACGGGTACTGTTCCAGGATCAGAGAAAGACAGTGACTCAATGGAAACAGAAGAAAAGACAGGTAGTGTACTTGTAGGAAAGACACCAGAAGCGAGTCCAGAGCCCAAGGACCAGACTTTGAAAATGATTAAAATTCTAAGTGGTGAAATGGCTATTGAGTTACATTTGCAGTTTTTAATACGAAACAATAACACAGATCTCATGATTCTAAAAAACACAAAGGATGCAGTAAGGAACTCTGTGTGTCACACAGCAACTGTTATAGCAAACTCTTTTATGCACTGTGGGACTACCAGTGACCAGTTTCTTAGAGATAACTTGGAATGGTTAGCCAGAGCCACTAACTGGGCAAAATTTACAGCCACGGCCAGTTTGGGTGTAATTCATAAGGGTCATGAGAAGGAAGCATTACAGTTAATGGCAACATATCTTCCCAAGGACACCTCTCCAGGATCAGCCTATCAGGAAGGTGGAGGTCTCTATGCACTAGGTCTCATTCATGCCAATCATGGTGGTGATATAATTGACTATCTGCTTAACCAGCTTAAGAATGCCAGCAATGATATTGTTCGACATGGTGGCAGTCTGGGCCTTGGTTTGGCTGCCATGGGGACTGCACGCCAGGATGTGTATGATTTGCTAAAAACAAACCTTTATCAGGATGATGCTGTGACAGGGGAAGCAGCTGGCCTGGCCCTAGGTTTGGTTATGTTGGGCTCTAAAAATGCCCAGGCTATTGAGGACATGGTTGGCTATGCACAGGAAACTCAACATGAGAAGATTCTACGTGGTCTTGCAGTTGGCATAGCATTAGTGATGTACGGGAGGATGGAAGAGGCTGATGCTCTCATTGAATCTCTCTGCCGTGATAAGGATCCAATTCTTCGACGATCTGGAATGTATACCGTGGCCATGGCTTATTGTGGTTCAGGTAACAACAAAGCTATTCGCCGCCTGCTACACGTTGCTGTAAGTACTCTGACCTTTCTTGGATAG

Related Sequences

bmy_04901T0 Protein

Length: 609 aa      View alignments
>bmy_04901T0
GIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETEEKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSTLTFLG*