Sequence detailsbmy_04946 (Coding sequence)

Part of scaffold_172 (SequenceType object (1))

For more information consult the page for scaffold_172 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ATG5ENSBTAG00000005400 (Cow)

Gene Details

Autophagy protein 5

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000007100, Cow)

Protein Percentage 95.5%
cDNA percentage 93.69%
Ka/Ks Ratio 0.20365 (Ka = 0.0399, Ks = 0.1957)

ATG5 (Minke Whale)

Gene Details

autophagy related 5

External Links

Gene match (Identifier: BACU014179, Minke Whale)

Protein Percentage 96.4%
cDNA percentage 96.4%
Ka/Ks Ratio 0.25671 (Ka = 0.024, Ks = 0.0934)

Additional orthologs identified in other species via the OPTIC pipeline.

ATG5 (Human)   Atg5 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 336 bp    Location:1006250..968069   Strand:-
Raw sequence 
>bmy_04946
ATGACAGATGACAAAGATGTGCTTCGAGATGTGTGGTTTGGACGAATTCCAACTTGCTTCACCCTCTATCAGGATGAGATAACTGAACGGGAGGCAGAACCATATTATTTGCTTTTGCCAAGAGTAAGTTATTTGACGTTGGTAACTGACAAAGTGAAAAAGCACTTTCAGAAGGTTATGAGACAAGAAGACATTAGTGAGATATGGTTTGAATATGAAGGCACACCACTGAAATGGCATTATCCAATTGGTTTGCTCTTTGATCTTCTTGCATCAAGTTCAGCTCTTCCTTGGAACATCACAGTACATTTTAAGGCAACTGTGACCAGCCGGTAG

Related Sequences

bmy_04946T0 SequenceType object (3)

Length: 112 aa      
>bmy_04946T0
MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKATVTSR*